Experiment: LB 10C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2411 and Pf1N1B4_2412 are separated by 131 nucleotides Pf1N1B4_2412 and Pf1N1B4_2413 are separated by 183 nucleotides
Pf1N1B4_2411 - FIG00953568: hypothetical protein, at 2,731,030 to 2,732,208
_2411
Pf1N1B4_2412 - ATP-dependent 23S rRNA helicase DbpA, at 2,732,340 to 2,733,725
_2412
Pf1N1B4_2413 - Permeases of the major facilitator superfamily, at 2,733,909 to 2,735,336
_2413
Position (kb)
2732
2733
2734 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2731.980 kb on - strand, within Pf1N1B4_2411 at 2732.379 kb on - strand at 2732.434 kb on + strand at 2732.435 kb on - strand at 2732.435 kb on - strand at 2732.435 kb on - strand at 2732.527 kb on - strand, within Pf1N1B4_2412 at 2732.527 kb on - strand, within Pf1N1B4_2412 at 2732.527 kb on - strand, within Pf1N1B4_2412 at 2732.527 kb on - strand, within Pf1N1B4_2412 at 2732.792 kb on + strand, within Pf1N1B4_2412 at 2732.843 kb on + strand at 2732.844 kb on - strand, within Pf1N1B4_2412 at 2732.844 kb on - strand, within Pf1N1B4_2412 at 2732.869 kb on - strand, within Pf1N1B4_2412 at 2733.055 kb on + strand, within Pf1N1B4_2412 at 2733.055 kb on + strand, within Pf1N1B4_2412 at 2733.055 kb on + strand, within Pf1N1B4_2412 at 2733.056 kb on - strand, within Pf1N1B4_2412 at 2733.227 kb on - strand, within Pf1N1B4_2412 at 2733.698 kb on + strand at 2733.698 kb on + strand at 2733.701 kb on + strand at 2733.701 kb on + strand at 2733.702 kb on - strand at 2733.702 kb on - strand at 2733.702 kb on - strand at 2733.760 kb on + strand at 2733.760 kb on + strand at 2733.760 kb on + strand at 2733.761 kb on - strand at 2733.761 kb on - strand at 2733.790 kb on - strand at 2733.800 kb on - strand at 2733.807 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 10C remove 2,731,980 - Pf1N1B4_2411 0.81 -2.0 2,732,379 - -2.3 2,732,434 + -1.8 2,732,435 - -1.5 2,732,435 - -0.7 2,732,435 - -2.6 2,732,527 - Pf1N1B4_2412 0.13 -2.0 2,732,527 - Pf1N1B4_2412 0.13 -3.0 2,732,527 - Pf1N1B4_2412 0.13 -0.7 2,732,527 - Pf1N1B4_2412 0.13 -1.8 2,732,792 + Pf1N1B4_2412 0.33 -3.1 2,732,843 + -1.2 2,732,844 - Pf1N1B4_2412 0.36 -1.6 2,732,844 - Pf1N1B4_2412 0.36 -1.7 2,732,869 - Pf1N1B4_2412 0.38 -2.8 2,733,055 + Pf1N1B4_2412 0.52 -2.5 2,733,055 + Pf1N1B4_2412 0.52 -1.9 2,733,055 + Pf1N1B4_2412 0.52 -1.9 2,733,056 - Pf1N1B4_2412 0.52 -0.0 2,733,227 - Pf1N1B4_2412 0.64 -1.8 2,733,698 + -0.6 2,733,698 + -1.3 2,733,701 + -3.3 2,733,701 + -3.3 2,733,702 - -1.5 2,733,702 - +0.2 2,733,702 - -1.2 2,733,760 + +0.4 2,733,760 + -0.3 2,733,760 + -0.0 2,733,761 - -0.8 2,733,761 - +0.0 2,733,790 - -0.7 2,733,800 - -0.8 2,733,807 - +0.7
Or see this region's nucleotide sequence