Experiment: LB 10C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_139 and Pf1N1B4_140 are separated by 43 nucleotides Pf1N1B4_140 and Pf1N1B4_141 are separated by 272 nucleotides
Pf1N1B4_139 - Pyoverdin biosynthesis protein PvdN, putative aminotransferase, class V, at 155,912 to 157,198
_139
Pf1N1B4_140 - PvdO, pyoverdine responsive serine/threonine kinase (predicted by OlgaV), at 157,242 to 158,129
_140
Pf1N1B4_141 - PvdE, pyoverdine ABC export system, fused ATPase and permease components, at 158,402 to 160,051
_141
Position (kb) 157
158
159 Strain fitness (log2 ratio) -2
-1
0
1 at 156.360 kb on - strand, within Pf1N1B4_139 at 156.360 kb on - strand, within Pf1N1B4_139 at 156.360 kb on - strand, within Pf1N1B4_139 at 156.617 kb on + strand, within Pf1N1B4_139 at 156.618 kb on - strand, within Pf1N1B4_139 at 156.618 kb on - strand, within Pf1N1B4_139 at 157.242 kb on - strand at 157.242 kb on - strand at 157.542 kb on + strand, within Pf1N1B4_140 at 157.677 kb on + strand, within Pf1N1B4_140 at 157.677 kb on + strand, within Pf1N1B4_140 at 157.677 kb on + strand, within Pf1N1B4_140 at 157.677 kb on + strand, within Pf1N1B4_140 at 157.743 kb on + strand, within Pf1N1B4_140 at 157.744 kb on - strand at 157.831 kb on - strand, within Pf1N1B4_140 at 157.848 kb on + strand, within Pf1N1B4_140 at 157.921 kb on - strand, within Pf1N1B4_140 at 157.921 kb on - strand, within Pf1N1B4_140 at 157.953 kb on + strand, within Pf1N1B4_140 at 157.953 kb on + strand, within Pf1N1B4_140 at 157.954 kb on - strand, within Pf1N1B4_140 at 157.954 kb on - strand, within Pf1N1B4_140 at 157.954 kb on - strand, within Pf1N1B4_140 at 157.954 kb on - strand, within Pf1N1B4_140 at 158.113 kb on + strand at 158.215 kb on + strand at 158.230 kb on - strand at 158.230 kb on - strand at 158.314 kb on + strand at 158.315 kb on - strand at 158.335 kb on + strand at 158.336 kb on - strand at 158.365 kb on + strand at 158.645 kb on + strand, within Pf1N1B4_141 at 158.645 kb on + strand, within Pf1N1B4_141 at 158.645 kb on + strand, within Pf1N1B4_141 at 158.645 kb on + strand, within Pf1N1B4_141 at 158.646 kb on - strand, within Pf1N1B4_141 at 158.769 kb on + strand, within Pf1N1B4_141 at 158.770 kb on - strand, within Pf1N1B4_141 at 158.770 kb on - strand, within Pf1N1B4_141 at 158.878 kb on - strand, within Pf1N1B4_141 at 158.878 kb on - strand, within Pf1N1B4_141 at 159.116 kb on - strand, within Pf1N1B4_141 at 159.116 kb on - strand, within Pf1N1B4_141
Per-strain Table
Position Strand Gene LocusTag Fraction LB 10C remove 156,360 - Pf1N1B4_139 0.35 -0.2 156,360 - Pf1N1B4_139 0.35 -0.3 156,360 - Pf1N1B4_139 0.35 -1.0 156,617 + Pf1N1B4_139 0.55 -1.4 156,618 - Pf1N1B4_139 0.55 -0.2 156,618 - Pf1N1B4_139 0.55 -1.8 157,242 - +1.1 157,242 - -0.0 157,542 + Pf1N1B4_140 0.34 +0.8 157,677 + Pf1N1B4_140 0.49 -0.5 157,677 + Pf1N1B4_140 0.49 -0.6 157,677 + Pf1N1B4_140 0.49 +0.4 157,677 + Pf1N1B4_140 0.49 +0.1 157,743 + Pf1N1B4_140 0.56 +0.3 157,744 - +0.7 157,831 - Pf1N1B4_140 0.66 -0.0 157,848 + Pf1N1B4_140 0.68 -0.4 157,921 - Pf1N1B4_140 0.76 -1.0 157,921 - Pf1N1B4_140 0.76 -0.5 157,953 + Pf1N1B4_140 0.80 -0.8 157,953 + Pf1N1B4_140 0.80 -0.8 157,954 - Pf1N1B4_140 0.80 +0.7 157,954 - Pf1N1B4_140 0.80 +0.1 157,954 - Pf1N1B4_140 0.80 -0.3 157,954 - Pf1N1B4_140 0.80 -0.0 158,113 + -0.4 158,215 + -0.4 158,230 - +0.7 158,230 - +1.3 158,314 + -0.2 158,315 - +0.4 158,335 + -0.9 158,336 - -1.0 158,365 + -1.1 158,645 + Pf1N1B4_141 0.15 -0.8 158,645 + Pf1N1B4_141 0.15 -1.6 158,645 + Pf1N1B4_141 0.15 -0.5 158,645 + Pf1N1B4_141 0.15 -0.9 158,646 - Pf1N1B4_141 0.15 -1.1 158,769 + Pf1N1B4_141 0.22 -1.6 158,770 - Pf1N1B4_141 0.22 -0.2 158,770 - Pf1N1B4_141 0.22 -1.3 158,878 - Pf1N1B4_141 0.29 -1.2 158,878 - Pf1N1B4_141 0.29 -0.9 159,116 - Pf1N1B4_141 0.43 +0.4 159,116 - Pf1N1B4_141 0.43 -0.5
Or see this region's nucleotide sequence