Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02230 and MMP_RS08940 are separated by 33 nucleotides MMP_RS08940 and MMP_RS02235 are separated by 195 nucleotides
MMP_RS02230: MMP_RS02230 - sodium-dependent transporter, at 420,466 to 421,977
_RS02230
MMP_RS08940: MMP_RS08940 - MetS family NSS transporter small subunit, at 422,011 to 422,091
_RS08940
MMP_RS02235: MMP_RS02235 - CBS domain-containing protein, at 422,287 to 423,252
_RS02235
Position (kb) 422
423 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 421.078 kb on - strand, within MMP_RS02230 at 421.107 kb on + strand, within MMP_RS02230 at 421.116 kb on - strand, within MMP_RS02230 at 421.326 kb on - strand, within MMP_RS02230 at 421.359 kb on + strand, within MMP_RS02230 at 421.409 kb on - strand, within MMP_RS02230 at 421.410 kb on + strand, within MMP_RS02230 at 421.410 kb on + strand, within MMP_RS02230 at 421.422 kb on + strand, within MMP_RS02230 at 421.615 kb on - strand, within MMP_RS02230 at 421.784 kb on + strand, within MMP_RS02230 at 421.983 kb on - strand at 422.009 kb on - strand at 422.010 kb on + strand at 422.036 kb on - strand, within MMP_RS08940 at 422.089 kb on - strand at 422.090 kb on + strand at 422.092 kb on - strand at 422.093 kb on + strand at 422.160 kb on - strand at 422.163 kb on + strand at 422.181 kb on - strand at 422.227 kb on - strand at 422.232 kb on - strand at 422.232 kb on - strand at 422.232 kb on - strand at 422.232 kb on - strand at 422.232 kb on - strand at 422.233 kb on + strand at 422.233 kb on + strand at 422.234 kb on - strand at 422.235 kb on + strand at 422.241 kb on - strand at 422.291 kb on - strand at 422.292 kb on + strand at 422.321 kb on - strand at 422.323 kb on - strand at 422.323 kb on - strand at 422.324 kb on + strand at 422.324 kb on + strand at 422.325 kb on - strand at 422.325 kb on - strand at 422.325 kb on - strand at 422.326 kb on + strand at 422.326 kb on + strand at 422.326 kb on + strand at 422.352 kb on - strand at 422.356 kb on - strand at 422.356 kb on - strand at 422.357 kb on + strand at 422.357 kb on + strand at 422.360 kb on - strand at 422.368 kb on - strand at 422.368 kb on - strand at 422.372 kb on - strand at 422.376 kb on - strand at 422.376 kb on - strand at 422.456 kb on - strand, within MMP_RS02235 at 422.456 kb on - strand, within MMP_RS02235 at 422.457 kb on + strand, within MMP_RS02235 at 422.471 kb on - strand, within MMP_RS02235 at 422.472 kb on + strand, within MMP_RS02235 at 422.518 kb on + strand, within MMP_RS02235 at 422.554 kb on + strand, within MMP_RS02235 at 422.623 kb on + strand, within MMP_RS02235 at 422.651 kb on - strand, within MMP_RS02235 at 422.794 kb on + strand, within MMP_RS02235 at 422.829 kb on - strand, within MMP_RS02235 at 422.863 kb on - strand, within MMP_RS02235 at 422.938 kb on - strand, within MMP_RS02235 at 422.938 kb on - strand, within MMP_RS02235 at 423.055 kb on + strand, within MMP_RS02235 at 423.071 kb on - strand, within MMP_RS02235 at 423.076 kb on + strand, within MMP_RS02235 at 423.090 kb on + strand, within MMP_RS02235
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 421,078 - MMP_RS02230 0.40 +0.3 421,107 + MMP_RS02230 0.42 -0.3 421,116 - MMP_RS02230 0.43 -0.5 421,326 - MMP_RS02230 0.57 -0.5 421,359 + MMP_RS02230 0.59 +0.2 421,409 - MMP_RS02230 0.62 -0.2 421,410 + MMP_RS02230 0.62 -0.7 421,410 + MMP_RS02230 0.62 -0.7 421,422 + MMP_RS02230 0.63 +0.4 421,615 - MMP_RS02230 0.76 -0.5 421,784 + MMP_RS02230 0.87 -0.3 421,983 - -0.3 422,009 - -0.1 422,010 + +0.2 422,036 - MMP_RS08940 0.31 -0.7 422,089 - -0.1 422,090 + +0.0 422,092 - +0.7 422,093 + -0.3 422,160 - -0.8 422,163 + -0.3 422,181 - +0.4 422,227 - -0.4 422,232 - -1.3 422,232 - -1.2 422,232 - -0.8 422,232 - -0.1 422,232 - -1.0 422,233 + -0.5 422,233 + -0.3 422,234 - -0.9 422,235 + -1.1 422,241 - -1.1 422,291 - -1.2 422,292 + -1.3 422,321 - -1.1 422,323 - -0.8 422,323 - -0.9 422,324 + -0.1 422,324 + -0.7 422,325 - -1.0 422,325 - -2.1 422,325 - -0.8 422,326 + -1.4 422,326 + -1.2 422,326 + -1.1 422,352 - -0.5 422,356 - -3.1 422,356 - -1.1 422,357 + -0.2 422,357 + -0.6 422,360 - -1.2 422,368 - -1.3 422,368 - -0.9 422,372 - -0.9 422,376 - -0.9 422,376 - -1.3 422,456 - MMP_RS02235 0.17 -1.0 422,456 - MMP_RS02235 0.17 -0.8 422,457 + MMP_RS02235 0.18 -1.4 422,471 - MMP_RS02235 0.19 -0.8 422,472 + MMP_RS02235 0.19 -1.0 422,518 + MMP_RS02235 0.24 -1.5 422,554 + MMP_RS02235 0.28 -1.1 422,623 + MMP_RS02235 0.35 -1.1 422,651 - MMP_RS02235 0.38 -1.1 422,794 + MMP_RS02235 0.52 -1.0 422,829 - MMP_RS02235 0.56 -1.7 422,863 - MMP_RS02235 0.60 -1.0 422,938 - MMP_RS02235 0.67 -1.3 422,938 - MMP_RS02235 0.67 -1.2 423,055 + MMP_RS02235 0.80 -1.0 423,071 - MMP_RS02235 0.81 -1.4 423,076 + MMP_RS02235 0.82 -1.4 423,090 + MMP_RS02235 0.83 -0.8
Or see this region's nucleotide sequence