Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08320

Experiment: Formate McCas no stress control 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas no stress control 1
1,563,425	+		MMP_RS08315	0.13	+0.4
1,563,457	+		MMP_RS08315	0.17	+2.1
1,563,745	-		MMP_RS08315	0.47	+0.1
1,563,746	+		MMP_RS08315	0.47	+0.3
1,564,169	-				+0.1
1,564,210	-				+0.6
1,564,210	-				+0.3
1,564,239	-				+0.5
1,564,239	-				+0.4
1,564,240	+				+0.1
1,564,274	-				+0.1
1,564,274	-				-0.2
1,564,275	+				+0.2
1,564,275	+				+0.2
1,564,275	+				-0.3
1,564,277	+				+0.1
1,564,278	-				+0.4
1,564,278	-				+0.7
1,564,279	+				+0.5
1,564,290	+				+0.3
1,564,299	+				+0.4
1,564,316	-				-0.4
1,564,482	+				-0.9
1,564,744	+		MMP_RS08320	0.28	-1.3
1,564,745	-		MMP_RS08320	0.28	-0.6
1,564,745	-		MMP_RS08320	0.28	-0.6
1,564,775	+		MMP_RS08320	0.31	-0.7
1,564,778	-		MMP_RS08320	0.31	-1.1
1,564,779	+		MMP_RS08320	0.31	-1.0
1,564,779	+		MMP_RS08320	0.31	-1.1
1,565,018	-		MMP_RS08320	0.51	-1.1
1,565,051	+		MMP_RS08320	0.54	-0.7
1,565,542	+				-1.0
1,565,598	-				-1.3
1,565,607	-				-0.0
1,565,628	-				-0.4
1,565,677	+		MMP_RS08325	0.19	+0.3
1,565,680	-		MMP_RS08325	0.20	+0.8
1,565,698	+		MMP_RS08325	0.26	+0.5
1,565,703	+		MMP_RS08325	0.28	+0.3
1,565,721	+		MMP_RS08325	0.34	+0.4
1,565,732	-		MMP_RS08325	0.37	-0.1
1,565,732	-		MMP_RS08325	0.37	+0.1
1,565,739	-		MMP_RS08325	0.40	+0.4
1,565,739	-		MMP_RS08325	0.40	-0.3
1,565,740	+		MMP_RS08325	0.40	+0.9
1,565,752	-		MMP_RS08325	0.44	+0.2
1,565,752	-		MMP_RS08325	0.44	-0.3
1,565,752	-		MMP_RS08325	0.44	-1.0
1,565,752	-		MMP_RS08325	0.44	-0.1
1,565,753	+		MMP_RS08325	0.45	-0.1
1,565,753	+		MMP_RS08325	0.45	-0.4
1,565,753	+		MMP_RS08325	0.45	-0.0
1,565,753	+		MMP_RS08325	0.45	+0.2
1,565,760	+		MMP_RS08325	0.47	-0.3
1,565,878	-		MMP_RS08325	0.87	-0.4
1,565,902	+				-0.1
1,565,951	+				+0.3
1,566,053	-				-0.7
1,566,053	-				-0.3
1,566,117	-		MMP_RS08330	0.16	-1.6
1,566,131	+		MMP_RS08330	0.18	-0.6
1,566,153	+		MMP_RS08330	0.20	-1.3
1,566,243	-		MMP_RS08330	0.29	+0.1
1,566,253	-		MMP_RS08330	0.30	-0.4
1,566,255	-		MMP_RS08330	0.30	-0.9
1,566,310	+		MMP_RS08330	0.36	-1.0
1,566,310	+		MMP_RS08330	0.36	-1.0
1,566,310	+		MMP_RS08330	0.36	-1.5
1,566,321	-		MMP_RS08330	0.37	-0.6
1,566,322	+		MMP_RS08330	0.37	+0.0