Strain Fitness in Methanococcus maripaludis S2 around MMP_RS07600

Experiment: Formate McCas no stress control 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS07590 and MMP_RS07595 are separated by 92 nucleotidesMMP_RS07595 and MMP_RS07600 are separated by 116 nucleotidesMMP_RS07600 and MMP_RS07605 are separated by 21 nucleotides MMP_RS07590: MMP_RS07590 - hypothetical protein, at 1,436,584 to 1,437,417 _RS07590 MMP_RS07595: MMP_RS07595 - hypothetical protein, at 1,437,510 to 1,438,247 _RS07595 MMP_RS07600: MMP_RS07600 - Ni-sirohydrochlorin a c-diamide synthase, at 1,438,364 to 1,439,708 _RS07600 MMP_RS07605: MMP_RS07605 - diadenylate cyclase, at 1,439,730 to 1,440,662 _RS07605 Position (kb) 1438 1439 1440Strain fitness (log2 ratio) -2 -1 0 1at 1437.370 kb on - strandat 1437.371 kb on + strandat 1437.394 kb on - strandat 1437.411 kb on - strandat 1437.418 kb on + strandat 1437.434 kb on + strandat 1437.479 kb on + strandat 1437.479 kb on + strandat 1437.481 kb on + strandat 1437.516 kb on - strandat 1437.516 kb on - strandat 1437.528 kb on - strandat 1437.538 kb on - strandat 1437.542 kb on + strandat 1437.542 kb on + strandat 1437.590 kb on + strand, within MMP_RS07595at 1437.590 kb on + strand, within MMP_RS07595at 1437.594 kb on + strand, within MMP_RS07595at 1437.594 kb on + strand, within MMP_RS07595at 1437.597 kb on - strand, within MMP_RS07595at 1437.676 kb on + strand, within MMP_RS07595at 1437.807 kb on - strand, within MMP_RS07595at 1437.926 kb on - strand, within MMP_RS07595at 1437.935 kb on - strand, within MMP_RS07595at 1437.937 kb on - strand, within MMP_RS07595at 1437.944 kb on + strand, within MMP_RS07595at 1437.971 kb on - strand, within MMP_RS07595at 1437.975 kb on - strand, within MMP_RS07595at 1437.976 kb on + strand, within MMP_RS07595at 1437.976 kb on + strand, within MMP_RS07595at 1437.997 kb on + strand, within MMP_RS07595at 1438.010 kb on + strand, within MMP_RS07595at 1438.127 kb on - strand, within MMP_RS07595at 1438.137 kb on - strand, within MMP_RS07595at 1438.296 kb on - strandat 1438.297 kb on + strandat 1438.340 kb on - strandat 1439.154 kb on - strand, within MMP_RS07600at 1439.180 kb on + strand, within MMP_RS07600at 1439.487 kb on + strand, within MMP_RS07600at 1439.545 kb on - strand, within MMP_RS07600at 1439.574 kb on + strandat 1439.601 kb on + strandat 1439.638 kb on - strandat 1439.639 kb on + strandat 1439.733 kb on + strandat 1439.987 kb on - strand, within MMP_RS07605at 1439.988 kb on + strand, within MMP_RS07605at 1440.123 kb on + strand, within MMP_RS07605at 1440.160 kb on + strand, within MMP_RS07605at 1440.692 kb on - strandat 1440.693 kb on + strandat 1440.704 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 1
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1,437,370 - -0.1
1,437,371 + -0.3
1,437,394 - -0.1
1,437,411 - -0.2
1,437,418 + +0.0
1,437,434 + +0.0
1,437,479 + -0.7
1,437,479 + +0.3
1,437,481 + +0.3
1,437,516 - +0.4
1,437,516 - -0.0
1,437,528 - +0.2
1,437,538 - -0.3
1,437,542 + +0.5
1,437,542 + -0.4
1,437,590 + MMP_RS07595 0.11 +0.1
1,437,590 + MMP_RS07595 0.11 +0.5
1,437,594 + MMP_RS07595 0.11 -0.1
1,437,594 + MMP_RS07595 0.11 +0.6
1,437,597 - MMP_RS07595 0.12 +0.2
1,437,676 + MMP_RS07595 0.22 -0.1
1,437,807 - MMP_RS07595 0.40 +1.0
1,437,926 - MMP_RS07595 0.56 +0.2
1,437,935 - MMP_RS07595 0.58 +0.1
1,437,937 - MMP_RS07595 0.58 +0.4
1,437,944 + MMP_RS07595 0.59 -0.4
1,437,971 - MMP_RS07595 0.62 +0.1
1,437,975 - MMP_RS07595 0.63 -0.4
1,437,976 + MMP_RS07595 0.63 +0.4
1,437,976 + MMP_RS07595 0.63 +0.3
1,437,997 + MMP_RS07595 0.66 -0.1
1,438,010 + MMP_RS07595 0.68 -0.2
1,438,127 - MMP_RS07595 0.84 -0.1
1,438,137 - MMP_RS07595 0.85 -0.3
1,438,296 - +0.5
1,438,297 + +0.3
1,438,340 - -0.8
1,439,154 - MMP_RS07600 0.59 -1.7
1,439,180 + MMP_RS07600 0.61 -0.6
1,439,487 + MMP_RS07600 0.83 -0.6
1,439,545 - MMP_RS07600 0.88 -2.4
1,439,574 + -0.4
1,439,601 + -1.3
1,439,638 - -1.8
1,439,639 + -1.1
1,439,733 + -0.1
1,439,987 - MMP_RS07605 0.28 -0.1
1,439,988 + MMP_RS07605 0.28 -0.9
1,440,123 + MMP_RS07605 0.42 -0.1
1,440,160 + MMP_RS07605 0.46 -1.4
1,440,692 - +0.4
1,440,693 + +0.3
1,440,704 + +0.7

Or see this region's nucleotide sequence