Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS07415 and MMP_RS07420 are separated by 110 nucleotides MMP_RS07420 and MMP_RS07425 are separated by 195 nucleotides MMP_RS07425 and MMP_RS07430 are separated by 10 nucleotides MMP_RS07430 and MMP_RS07435 are separated by 19 nucleotides
MMP_RS07415: MMP_RS07415 - molybdopterin-guanine dinucleotide biosynthesis protein MobB, at 1,412,750 to 1,413,439
_RS07415
MMP_RS07420: MMP_RS07420 - metalloregulator ArsR/SmtB family transcription factor, at 1,413,550 to 1,413,837
_RS07420
MMP_RS07425: MMP_RS07425 - GTP-binding protein, at 1,414,033 to 1,415,142
_RS07425
MMP_RS07430: MMP_RS07430 - type II methionyl aminopeptidase, at 1,415,153 to 1,416,040
_RS07430
MMP_RS07435: MMP_RS07435 - GMP synthase subunit A, at 1,416,060 to 1,416,629
_RS07435
Position (kb)
1414
1415
1416 Strain fitness (log2 ratio)
-2
-1
0
1 at 1413.055 kb on - strand, within MMP_RS07415 at 1413.067 kb on + strand, within MMP_RS07415 at 1413.073 kb on + strand, within MMP_RS07415 at 1413.195 kb on + strand, within MMP_RS07415 at 1413.297 kb on - strand, within MMP_RS07415 at 1413.365 kb on + strand, within MMP_RS07415 at 1413.365 kb on + strand, within MMP_RS07415 at 1413.366 kb on - strand, within MMP_RS07415 at 1413.378 kb on - strand at 1413.379 kb on + strand at 1413.379 kb on + strand at 1413.445 kb on + strand at 1413.475 kb on - strand at 1413.526 kb on + strand at 1413.527 kb on - strand at 1413.557 kb on - strand at 1413.571 kb on - strand at 1413.615 kb on - strand, within MMP_RS07420 at 1413.616 kb on + strand, within MMP_RS07420 at 1413.639 kb on + strand, within MMP_RS07420 at 1413.654 kb on - strand, within MMP_RS07420 at 1413.775 kb on - strand, within MMP_RS07420 at 1413.778 kb on - strand, within MMP_RS07420 at 1413.778 kb on - strand, within MMP_RS07420 at 1413.779 kb on + strand, within MMP_RS07420 at 1413.779 kb on + strand, within MMP_RS07420 at 1413.785 kb on - strand, within MMP_RS07420 at 1413.797 kb on - strand, within MMP_RS07420 at 1413.810 kb on + strand at 1413.813 kb on - strand at 1413.813 kb on - strand at 1413.813 kb on - strand at 1413.814 kb on + strand at 1413.814 kb on + strand at 1413.814 kb on + strand at 1413.814 kb on + strand at 1413.814 kb on + strand at 1413.817 kb on + strand at 1413.875 kb on - strand at 1413.877 kb on - strand at 1413.877 kb on - strand at 1413.877 kb on - strand at 1413.896 kb on - strand at 1413.897 kb on + strand at 1413.897 kb on + strand at 1413.898 kb on - strand at 1413.898 kb on - strand at 1413.899 kb on + strand at 1413.919 kb on + strand at 1414.074 kb on + strand at 1414.076 kb on - strand at 1414.089 kb on - strand at 1414.089 kb on - strand at 1414.090 kb on + strand at 1414.138 kb on + strand at 1414.279 kb on + strand, within MMP_RS07425 at 1414.451 kb on - strand, within MMP_RS07425 at 1414.452 kb on + strand, within MMP_RS07425 at 1414.633 kb on + strand, within MMP_RS07425 at 1414.683 kb on + strand, within MMP_RS07425 at 1414.685 kb on - strand, within MMP_RS07425 at 1414.836 kb on + strand, within MMP_RS07425 at 1414.906 kb on + strand, within MMP_RS07425 at 1414.958 kb on - strand, within MMP_RS07425 at 1414.963 kb on + strand, within MMP_RS07425 at 1414.996 kb on + strand, within MMP_RS07425 at 1415.110 kb on + strand at 1415.112 kb on + strand at 1415.515 kb on + strand at 1415.543 kb on + strand at 1415.652 kb on - strand at 1415.652 kb on - strand at 1415.766 kb on - strand at 1415.771 kb on + strand at 1415.824 kb on + strand at 1415.853 kb on + strand at 1415.996 kb on + strand at 1416.120 kb on - strand, within MMP_RS07435 at 1416.130 kb on - strand, within MMP_RS07435
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 1,413,055 - MMP_RS07415 0.44 +0.4 1,413,067 + MMP_RS07415 0.46 +0.3 1,413,073 + MMP_RS07415 0.47 +0.1 1,413,195 + MMP_RS07415 0.64 +0.7 1,413,297 - MMP_RS07415 0.79 +0.2 1,413,365 + MMP_RS07415 0.89 -0.3 1,413,365 + MMP_RS07415 0.89 -0.0 1,413,366 - MMP_RS07415 0.89 -0.1 1,413,378 - +0.2 1,413,379 + +0.8 1,413,379 + +0.4 1,413,445 + +0.5 1,413,475 - +0.3 1,413,526 + +0.4 1,413,527 - +0.3 1,413,557 - -1.0 1,413,571 - +1.1 1,413,615 - MMP_RS07420 0.23 +0.6 1,413,616 + MMP_RS07420 0.23 +1.0 1,413,639 + MMP_RS07420 0.31 +0.1 1,413,654 - MMP_RS07420 0.36 +0.2 1,413,775 - MMP_RS07420 0.78 +0.6 1,413,778 - MMP_RS07420 0.79 +0.5 1,413,778 - MMP_RS07420 0.79 -0.3 1,413,779 + MMP_RS07420 0.80 -0.5 1,413,779 + MMP_RS07420 0.80 +0.5 1,413,785 - MMP_RS07420 0.82 +0.1 1,413,797 - MMP_RS07420 0.86 +0.7 1,413,810 + -0.3 1,413,813 - +0.4 1,413,813 - -0.3 1,413,813 - +0.3 1,413,814 + -0.1 1,413,814 + -0.3 1,413,814 + -0.1 1,413,814 + -0.4 1,413,814 + -0.4 1,413,817 + +0.1 1,413,875 - +0.1 1,413,877 - +0.2 1,413,877 - -0.1 1,413,877 - +0.4 1,413,896 - -1.4 1,413,897 + -0.8 1,413,897 + -0.9 1,413,898 - -0.4 1,413,898 - -0.6 1,413,899 + -0.9 1,413,919 + -0.4 1,414,074 + -0.7 1,414,076 - -2.1 1,414,089 - -1.5 1,414,089 - -1.9 1,414,090 + -0.6 1,414,138 + -0.8 1,414,279 + MMP_RS07425 0.22 -0.1 1,414,451 - MMP_RS07425 0.38 +0.0 1,414,452 + MMP_RS07425 0.38 -0.2 1,414,633 + MMP_RS07425 0.54 -0.2 1,414,683 + MMP_RS07425 0.59 -0.9 1,414,685 - MMP_RS07425 0.59 +0.3 1,414,836 + MMP_RS07425 0.72 -0.6 1,414,906 + MMP_RS07425 0.79 -0.9 1,414,958 - MMP_RS07425 0.83 -1.0 1,414,963 + MMP_RS07425 0.84 -0.6 1,414,996 + MMP_RS07425 0.87 -1.2 1,415,110 + -0.8 1,415,112 + -0.3 1,415,515 + -2.2 1,415,543 + -1.6 1,415,652 - -0.8 1,415,652 - -1.8 1,415,766 - -1.5 1,415,771 + -0.2 1,415,824 + +0.2 1,415,853 + -0.7 1,415,996 + -2.0 1,416,120 - MMP_RS07435 0.11 -0.0 1,416,130 - MMP_RS07435 0.12 +0.9
Or see this region's nucleotide sequence