Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06550

Experiment: Formate McCas no stress control 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas no stress control 1
1,257,685	+		MMP_RS06540	0.88	+0.4
1,257,705	+				+0.3
1,257,738	-				+0.1
1,257,756	-				+1.3
1,257,756	-				-0.4
1,257,757	+				+0.3
1,257,810	+				+0.7
1,257,812	+				+1.0
1,257,812	+				+0.7
1,257,853	+		MMP_RS06545	0.14	-0.2
1,257,877	-		MMP_RS06545	0.24	+0.9
1,257,922	+		MMP_RS06545	0.43	+0.4
1,257,929	-		MMP_RS06545	0.46	+0.2
1,257,963	-		MMP_RS06545	0.60	+0.1
1,258,027	+		MMP_RS06545	0.87	+0.1
1,258,109	+				+0.2
1,258,130	-				+0.0
1,258,139	-				+0.6
1,258,143	-				+0.3
1,258,320	+		MMP_RS06550	0.11	+0.3
1,258,406	+		MMP_RS06550	0.16	+0.8
1,258,670	-		MMP_RS06550	0.32	+0.1
1,258,676	-		MMP_RS06550	0.32	+0.4
1,258,733	+		MMP_RS06550	0.35	+0.5
1,258,733	+		MMP_RS06550	0.35	-1.0
1,258,908	-		MMP_RS06550	0.46	+0.6
1,258,937	+		MMP_RS06550	0.47	+0.6
1,259,003	-		MMP_RS06550	0.51	+0.3
1,259,449	-		MMP_RS06550	0.78	+0.2
1,259,611	-		MMP_RS06550	0.88	+0.3
1,259,660	+				-0.0
1,259,660	+				+0.5
1,259,846	-				+0.6
1,259,860	-				+0.6
1,259,863	+				+0.2
1,259,864	-				+0.2
1,259,869	+				+0.2
1,259,907	+				+0.5
1,259,998	-		MMP_RS06555	0.24	+0.5
1,260,141	-		MMP_RS06555	0.49	+0.3
1,260,422	+				-0.2
1,260,422	+				-0.2
1,260,451	+				+0.5
1,260,456	+				+0.0
1,260,460	-				+0.5
1,260,463	+				+0.6
1,260,501	-				-0.2
1,260,501	-				+0.4
1,260,502	+				-0.2
1,260,522	+				+0.5
1,260,535	+				+0.1
1,260,535	+				-0.5
1,260,535	+				-0.6
1,260,549	-				+0.1
1,260,550	+				-0.3
1,260,551	-				+0.5
1,260,552	+				+0.8
1,260,552	+				+0.3
1,260,552	+				-0.2
1,260,564	+				+0.3
1,260,611	-				+0.0
1,260,612	+				+0.1
1,260,612	+				+0.3
1,260,612	+				+0.0
1,260,645	-				-0.1
1,260,648	+				-2.4
1,260,733	-		MMP_RS06560	0.11	+0.1
1,260,733	-		MMP_RS06560	0.11	+0.1
1,260,734	+		MMP_RS06560	0.11	+0.1
1,260,768	-		MMP_RS06560	0.19	+0.1
1,260,768	-		MMP_RS06560	0.19	-1.1
1,260,768	-		MMP_RS06560	0.19	+0.1
1,260,769	+		MMP_RS06560	0.19	+0.5
1,260,779	+		MMP_RS06560	0.21	-0.2
1,260,779	+		MMP_RS06560	0.21	+0.2