Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06435

Experiment: Formate McCas no stress control 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06425 and MMP_RS06430 are separated by 92 nucleotidesMMP_RS06430 and MMP_RS06435 are separated by 90 nucleotidesMMP_RS06435 and MMP_RS06440 are separated by 22 nucleotidesMMP_RS06440 and MMP_RS06445 are separated by 119 nucleotides MMP_RS06425: MMP_RS06425 - formylmethanofuran dehydrogenase subunit C, at 1,232,954 to 1,233,772 _RS06425 MMP_RS06430: MMP_RS06430 - 6-carboxytetrahydropterin synthase QueD, at 1,233,865 to 1,234,368 _RS06430 MMP_RS06435: MMP_RS06435 - CBS domain-containing protein, at 1,234,459 to 1,235,019 _RS06435 MMP_RS06440: MMP_RS06440 - CBS domain-containing protein, at 1,235,042 to 1,235,881 _RS06440 MMP_RS06445: MMP_RS06445 - DUF89 domain-containing protein, at 1,236,001 to 1,236,900 _RS06445 Position (kb) 1234 1235 1236Strain fitness (log2 ratio) -2 -1 0 1at 1233.708 kb on + strandat 1233.820 kb on - strandat 1233.826 kb on - strandat 1233.827 kb on + strandat 1233.827 kb on + strandat 1233.827 kb on + strandat 1233.828 kb on - strandat 1233.828 kb on - strandat 1233.829 kb on + strandat 1233.832 kb on - strandat 1233.832 kb on - strandat 1233.832 kb on - strandat 1233.833 kb on + strandat 1233.833 kb on + strandat 1233.834 kb on - strandat 1233.835 kb on + strandat 1233.837 kb on - strandat 1233.837 kb on - strandat 1233.847 kb on + strandat 1233.865 kb on + strandat 1233.865 kb on + strandat 1233.947 kb on - strand, within MMP_RS06430at 1234.046 kb on - strand, within MMP_RS06430at 1234.135 kb on - strand, within MMP_RS06430at 1234.139 kb on - strand, within MMP_RS06430at 1234.140 kb on + strand, within MMP_RS06430at 1234.236 kb on + strand, within MMP_RS06430at 1234.244 kb on + strand, within MMP_RS06430at 1234.256 kb on + strand, within MMP_RS06430at 1234.320 kb on + strandat 1234.367 kb on + strandat 1234.405 kb on - strandat 1234.405 kb on - strandat 1234.413 kb on + strandat 1234.740 kb on - strand, within MMP_RS06435at 1234.741 kb on + strand, within MMP_RS06435at 1234.763 kb on - strand, within MMP_RS06435at 1234.796 kb on - strand, within MMP_RS06435at 1234.809 kb on - strand, within MMP_RS06435at 1234.814 kb on - strand, within MMP_RS06435at 1234.825 kb on + strand, within MMP_RS06435at 1234.879 kb on + strand, within MMP_RS06435at 1235.086 kb on + strandat 1235.092 kb on - strandat 1235.149 kb on + strand, within MMP_RS06440at 1235.322 kb on - strand, within MMP_RS06440at 1235.326 kb on + strand, within MMP_RS06440at 1235.704 kb on + strand, within MMP_RS06440at 1235.710 kb on + strand, within MMP_RS06440at 1235.760 kb on - strand, within MMP_RS06440at 1235.773 kb on - strand, within MMP_RS06440at 1235.795 kb on + strand, within MMP_RS06440at 1235.811 kb on - strandat 1235.859 kb on - strandat 1235.879 kb on - strandat 1235.880 kb on + strandat 1235.884 kb on + strandat 1235.887 kb on + strandat 1235.913 kb on - strandat 1235.956 kb on + strandat 1235.958 kb on - strandat 1235.959 kb on + strandat 1235.962 kb on + strandat 1235.979 kb on + strandat 1235.979 kb on + strandat 1235.981 kb on - strandat 1235.981 kb on - strandat 1235.982 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 1
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1,233,708 + -2.2
1,233,820 - +0.3
1,233,826 - -0.3
1,233,827 + +0.2
1,233,827 + +1.0
1,233,827 + -0.1
1,233,828 - -0.0
1,233,828 - -0.0
1,233,829 + -0.5
1,233,832 - -0.1
1,233,832 - +0.5
1,233,832 - -0.3
1,233,833 + -0.0
1,233,833 + -0.1
1,233,834 - -1.3
1,233,835 + -0.2
1,233,837 - -0.1
1,233,837 - +0.2
1,233,847 + -0.1
1,233,865 + +0.2
1,233,865 + -0.0
1,233,947 - MMP_RS06430 0.16 -0.3
1,234,046 - MMP_RS06430 0.36 -0.1
1,234,135 - MMP_RS06430 0.54 -0.1
1,234,139 - MMP_RS06430 0.54 -0.1
1,234,140 + MMP_RS06430 0.55 -0.1
1,234,236 + MMP_RS06430 0.74 -0.0
1,234,244 + MMP_RS06430 0.75 -0.2
1,234,256 + MMP_RS06430 0.78 -0.9
1,234,320 + -0.2
1,234,367 + +0.0
1,234,405 - +0.3
1,234,405 - +0.7
1,234,413 + +0.8
1,234,740 - MMP_RS06435 0.50 +0.8
1,234,741 + MMP_RS06435 0.50 +0.2
1,234,763 - MMP_RS06435 0.54 -0.0
1,234,796 - MMP_RS06435 0.60 +0.5
1,234,809 - MMP_RS06435 0.62 +0.3
1,234,814 - MMP_RS06435 0.63 -0.2
1,234,825 + MMP_RS06435 0.65 +0.6
1,234,879 + MMP_RS06435 0.75 +0.7
1,235,086 + +0.3
1,235,092 - -0.1
1,235,149 + MMP_RS06440 0.13 +0.2
1,235,322 - MMP_RS06440 0.33 -0.3
1,235,326 + MMP_RS06440 0.34 -0.1
1,235,704 + MMP_RS06440 0.79 -0.1
1,235,710 + MMP_RS06440 0.80 -0.1
1,235,760 - MMP_RS06440 0.85 +0.4
1,235,773 - MMP_RS06440 0.87 +0.4
1,235,795 + MMP_RS06440 0.90 -0.1
1,235,811 - +0.4
1,235,859 - +0.2
1,235,879 - +0.1
1,235,880 + +0.0
1,235,884 + +0.9
1,235,887 + -0.1
1,235,913 - +0.2
1,235,956 + +0.0
1,235,958 - +1.0
1,235,959 + +0.2
1,235,962 + +0.1
1,235,979 + +0.1
1,235,979 + -0.1
1,235,981 - +0.0
1,235,981 - +0.3
1,235,982 + +0.5

Or see this region's nucleotide sequence