Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06120

Experiment: Formate McCas no stress control 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas no stress control 1
1,170,662	+				+0.3
1,170,669	-				+0.2
1,170,672	-				+0.4
1,170,713	-				+0.3
1,170,735	-				+0.1
1,170,773	+		MMP_RS06115	0.14	-0.0
1,170,797	+		MMP_RS06115	0.19	-0.2
1,170,798	-		MMP_RS06115	0.19	+0.2
1,170,799	+		MMP_RS06115	0.19	-0.4
1,170,799	+		MMP_RS06115	0.19	+0.1
1,170,799	+		MMP_RS06115	0.19	+0.1
1,170,799	+		MMP_RS06115	0.19	+0.3
1,170,799	+		MMP_RS06115	0.19	+0.3
1,170,799	+		MMP_RS06115	0.19	-0.3
1,170,799	+		MMP_RS06115	0.19	-0.2
1,170,800	-		MMP_RS06115	0.19	+0.1
1,170,801	+		MMP_RS06115	0.19	+0.3
1,170,801	+		MMP_RS06115	0.19	-0.7
1,170,801	+		MMP_RS06115	0.19	+0.4
1,170,803	-		MMP_RS06115	0.20	-0.1
1,170,846	+		MMP_RS06115	0.28	+0.1
1,170,846	+		MMP_RS06115	0.28	+0.0
1,170,878	+		MMP_RS06115	0.34	-0.3
1,170,878	+		MMP_RS06115	0.34	-0.6
1,170,891	+		MMP_RS06115	0.36	-0.4
1,170,950	+		MMP_RS06115	0.47	-0.3
1,171,051	+		MMP_RS06115	0.65	+0.2
1,171,051	+		MMP_RS06115	0.65	+0.3
1,171,173	-		MMP_RS06115	0.88	-0.9
1,171,174	+		MMP_RS06115	0.88	+0.5
1,171,211	+				+0.6
1,171,215	-				+0.2
1,171,216	+				-0.1
1,171,220	-				+0.3
1,171,220	-				+0.0
1,171,221	+				-0.2
1,171,221	+				+0.0
1,171,232	+				+0.2
1,171,242	+				-0.2
1,171,255	+				-0.3
1,171,307	-				+0.7
1,171,337	-				-0.7
1,171,338	+		MMP_RS06120	0.10	-1.6
1,171,338	+		MMP_RS06120	0.10	-1.3
1,171,375	-		MMP_RS06120	0.24	-1.3
1,171,541	+		MMP_RS06120	0.84	-1.3
1,171,647	-				-2.2
1,171,654	-				-0.1
1,171,654	-				-0.2
1,171,685	+				+0.2
1,171,685	+				+0.2
1,171,710	-				-0.2
1,171,740	-				+0.6
1,171,867	+				-1.4
1,171,928	-				-0.5
1,171,993	+				-1.5
1,172,077	-				-1.8
1,172,083	+				+0.1
1,172,121	-				-0.8
1,172,164	+				-1.2
1,172,220	+				-2.0
1,172,249	-				-0.8
1,172,249	-				-1.1
1,172,250	+				-0.8
1,172,264	-				-2.1
1,172,265	+				-0.8
1,172,436	+				-2.3
1,172,495	+				-1.0