Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05900

Experiment: Formate McCas no stress control 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05890 and MMP_RS05895 are separated by 2 nucleotidesMMP_RS05895 and MMP_RS05900 are separated by 35 nucleotidesMMP_RS05900 and MMP_RS05905 are separated by 27 nucleotidesMMP_RS05905 and MMP_RS05910 are separated by 154 nucleotides MMP_RS05890: MMP_RS05890 - ATP-dependent helicase, at 1,130,162 to 1,132,729 _RS05890 MMP_RS05895: MMP_RS05895 - metallophosphoesterase, at 1,132,732 to 1,133,442 _RS05895 MMP_RS05900: MMP_RS05900 - tetratricopeptide repeat protein, at 1,133,478 to 1,133,846 _RS05900 MMP_RS05905: MMP_RS05905 - undecaprenyl-diphosphate phosphatase, at 1,133,874 to 1,134,623 _RS05905 MMP_RS05910: MMP_RS05910 - cell division ATPase MinD, at 1,134,778 to 1,135,566 _RS05910 Position (kb) 1133 1134Strain fitness (log2 ratio) -1 0 1at 1132.572 kb on - strandat 1132.573 kb on + strandat 1132.573 kb on + strandat 1132.687 kb on - strandat 1132.688 kb on + strandat 1132.727 kb on - strandat 1132.727 kb on - strandat 1132.739 kb on - strandat 1132.740 kb on + strandat 1132.802 kb on - strandat 1132.865 kb on - strand, within MMP_RS05895at 1132.866 kb on + strand, within MMP_RS05895at 1133.037 kb on + strand, within MMP_RS05895at 1133.057 kb on - strand, within MMP_RS05895at 1133.058 kb on + strand, within MMP_RS05895at 1133.058 kb on + strand, within MMP_RS05895at 1133.070 kb on - strand, within MMP_RS05895at 1133.071 kb on + strand, within MMP_RS05895at 1133.072 kb on - strand, within MMP_RS05895at 1133.073 kb on + strand, within MMP_RS05895at 1133.076 kb on - strand, within MMP_RS05895at 1133.085 kb on - strand, within MMP_RS05895at 1133.095 kb on + strand, within MMP_RS05895at 1133.107 kb on - strand, within MMP_RS05895at 1133.180 kb on - strand, within MMP_RS05895at 1133.214 kb on + strand, within MMP_RS05895at 1133.214 kb on + strand, within MMP_RS05895at 1133.292 kb on - strand, within MMP_RS05895at 1133.371 kb on + strand, within MMP_RS05895at 1133.382 kb on - strandat 1133.586 kb on - strand, within MMP_RS05900at 1133.586 kb on - strand, within MMP_RS05900at 1133.592 kb on - strand, within MMP_RS05900at 1133.593 kb on + strand, within MMP_RS05900at 1133.599 kb on - strand, within MMP_RS05900at 1133.599 kb on - strand, within MMP_RS05900at 1133.600 kb on + strand, within MMP_RS05900at 1133.600 kb on + strand, within MMP_RS05900at 1133.605 kb on - strand, within MMP_RS05900at 1133.709 kb on - strand, within MMP_RS05900at 1133.890 kb on + strandat 1134.202 kb on + strand, within MMP_RS05905at 1134.227 kb on - strand, within MMP_RS05905at 1134.246 kb on + strand, within MMP_RS05905at 1134.349 kb on + strand, within MMP_RS05905at 1134.359 kb on - strand, within MMP_RS05905at 1134.402 kb on - strand, within MMP_RS05905at 1134.402 kb on - strand, within MMP_RS05905at 1134.435 kb on - strand, within MMP_RS05905at 1134.547 kb on + strand, within MMP_RS05905at 1134.587 kb on - strandat 1134.643 kb on + strandat 1134.643 kb on + strandat 1134.664 kb on - strandat 1134.665 kb on + strandat 1134.667 kb on - strandat 1134.668 kb on + strandat 1134.679 kb on - strandat 1134.680 kb on + strandat 1134.702 kb on - strandat 1134.710 kb on - strandat 1134.730 kb on - strandat 1134.730 kb on - strandat 1134.731 kb on + strandat 1134.737 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 1
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1,132,572 - +0.5
1,132,573 + +0.6
1,132,573 + -0.5
1,132,687 - +0.0
1,132,688 + -0.0
1,132,727 - +0.4
1,132,727 - -0.1
1,132,739 - +0.4
1,132,740 + -0.1
1,132,802 - +0.1
1,132,865 - MMP_RS05895 0.19 -0.0
1,132,866 + MMP_RS05895 0.19 +0.3
1,133,037 + MMP_RS05895 0.43 -0.1
1,133,057 - MMP_RS05895 0.46 -0.6
1,133,058 + MMP_RS05895 0.46 +0.1
1,133,058 + MMP_RS05895 0.46 +0.1
1,133,070 - MMP_RS05895 0.48 +0.2
1,133,071 + MMP_RS05895 0.48 +0.3
1,133,072 - MMP_RS05895 0.48 +0.2
1,133,073 + MMP_RS05895 0.48 +0.1
1,133,076 - MMP_RS05895 0.48 +0.0
1,133,085 - MMP_RS05895 0.50 +0.3
1,133,095 + MMP_RS05895 0.51 -0.0
1,133,107 - MMP_RS05895 0.53 +0.0
1,133,180 - MMP_RS05895 0.63 +0.0
1,133,214 + MMP_RS05895 0.68 +0.3
1,133,214 + MMP_RS05895 0.68 -0.0
1,133,292 - MMP_RS05895 0.79 +0.0
1,133,371 + MMP_RS05895 0.90 +0.3
1,133,382 - -0.1
1,133,586 - MMP_RS05900 0.29 +0.8
1,133,586 - MMP_RS05900 0.29 +0.3
1,133,592 - MMP_RS05900 0.31 +0.4
1,133,593 + MMP_RS05900 0.31 -0.5
1,133,599 - MMP_RS05900 0.33 +0.3
1,133,599 - MMP_RS05900 0.33 -0.0
1,133,600 + MMP_RS05900 0.33 +0.3
1,133,600 + MMP_RS05900 0.33 +0.5
1,133,605 - MMP_RS05900 0.34 +0.1
1,133,709 - MMP_RS05900 0.63 +0.3
1,133,890 + -0.1
1,134,202 + MMP_RS05905 0.44 -0.4
1,134,227 - MMP_RS05905 0.47 +0.3
1,134,246 + MMP_RS05905 0.50 +0.3
1,134,349 + MMP_RS05905 0.63 +0.3
1,134,359 - MMP_RS05905 0.65 -0.4
1,134,402 - MMP_RS05905 0.70 +0.2
1,134,402 - MMP_RS05905 0.70 +0.0
1,134,435 - MMP_RS05905 0.75 +0.3
1,134,547 + MMP_RS05905 0.90 +0.2
1,134,587 - +0.0
1,134,643 + +0.4
1,134,643 + -0.5
1,134,664 - -0.1
1,134,665 + +0.0
1,134,667 - +0.3
1,134,668 + -0.1
1,134,679 - -0.1
1,134,680 + -0.5
1,134,702 - +0.5
1,134,710 - -0.4
1,134,730 - -0.2
1,134,730 - -0.2
1,134,731 + +0.4
1,134,737 - +0.1

Or see this region's nucleotide sequence