Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05530

Experiment: Formate McCas no stress control 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas no stress control 1
1,060,455	+				+0.2
1,060,478	+				+0.3
1,060,479	-				+0.1
1,060,479	-				-0.4
1,060,479	-				-0.6
1,060,480	+				+0.4
1,060,480	+				+0.2
1,060,483	+				-0.1
1,060,585	+		MMP_RS05525	0.15	-0.2
1,060,679	-		MMP_RS05525	0.25	-0.5
1,060,862	-		MMP_RS05525	0.44	-0.1
1,060,882	+		MMP_RS05525	0.46	-0.7
1,060,972	-		MMP_RS05525	0.56	+0.6
1,060,973	+		MMP_RS05525	0.56	+0.1
1,060,973	+		MMP_RS05525	0.56	-1.0
1,060,982	+		MMP_RS05525	0.57	-0.3
1,061,071	-		MMP_RS05525	0.66	+0.4
1,061,134	+		MMP_RS05525	0.73	+0.3
1,061,277	-		MMP_RS05525	0.87	+0.5
1,061,295	+		MMP_RS05525	0.89	-0.1
1,061,388	-				+0.3
1,061,389	+				+0.7
1,061,526	+				-0.3
1,061,538	-		MMP_RS05530	0.11	+0.2
1,061,538	-		MMP_RS05530	0.11	-0.6
1,061,774	-		MMP_RS05530	0.36	-0.1
1,061,852	-		MMP_RS05530	0.44	+0.4
1,061,853	+		MMP_RS05530	0.45	+0.3
1,061,877	-		MMP_RS05530	0.47	-0.0
1,061,878	+		MMP_RS05530	0.47	+0.6
1,061,878	+		MMP_RS05530	0.47	-0.2
1,061,906	-		MMP_RS05530	0.50	+0.1
1,061,910	+		MMP_RS05530	0.51	-0.1
1,061,914	-		MMP_RS05530	0.51	+1.0
1,061,918	+		MMP_RS05530	0.52	+0.4
1,061,970	-		MMP_RS05530	0.57	+0.5
1,062,027	+		MMP_RS05530	0.63	+0.2
1,062,027	+		MMP_RS05530	0.63	-0.0
1,062,113	+		MMP_RS05530	0.73	-0.0
1,062,138	-		MMP_RS05530	0.75	+0.5
1,062,182	+		MMP_RS05530	0.80	-0.1
1,062,250	+		MMP_RS05530	0.87	+0.9
1,062,252	-		MMP_RS05530	0.88	+0.4
1,062,325	-				+0.8
1,062,350	-				+0.5
1,062,353	-				-0.9
1,062,353	-				-0.1
1,062,353	-				+0.3
1,062,355	-				+0.2
1,062,355	-				+0.1
1,062,355	-				+1.3
1,062,356	+				+0.2
1,062,369	-				-0.3
1,062,370	+				+0.5
1,062,370	+				+0.5
1,062,370	+				-0.0
1,062,452	-				-0.2
1,062,452	-				+0.6
1,062,516	-		MMP_RS05535	0.19	+0.3
1,062,517	+		MMP_RS05535	0.19	+0.6
1,062,517	+		MMP_RS05535	0.19	+0.5
1,062,520	-		MMP_RS05535	0.20	+0.2
1,062,520	-		MMP_RS05535	0.20	+0.1
1,062,520	-		MMP_RS05535	0.20	+1.3
1,062,520	-		MMP_RS05535	0.20	+1.3
1,062,521	+		MMP_RS05535	0.20	+1.2
1,062,912	+		MMP_RS05535	0.83	+0.8
1,062,912	+		MMP_RS05535	0.83	+1.3
1,062,999	-				+0.6
1,063,000	+				+1.0
1,063,005	+				+0.1
1,063,008	-				+1.1
1,063,008	-				+1.2
1,063,008	-				+0.8
1,063,033	-				+0.8
1,063,033	-				+0.8
1,063,034	+				-0.4
1,063,041	-				+1.3
1,063,041	-				+0.8
1,063,041	-				+1.0
1,063,041	-				+1.0
1,063,042	+				+1.7
1,063,042	+				+1.4
1,063,042	+				+0.8
1,063,042	+				+0.9
1,063,061	+				+1.7
1,063,071	+				+1.4
1,063,097	+				+0.2
1,063,154	+		MMP_RS05540	0.10	-0.2
1,063,189	+		MMP_RS05540	0.19	+0.4
1,063,298	+		MMP_RS05540	0.45	-1.0