Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05100

Experiment: Formate McCas no stress control 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05090 and MMP_RS05095 are separated by 11 nucleotidesMMP_RS05095 and MMP_RS05100 are separated by 9 nucleotidesMMP_RS05100 and MMP_RS05105 are separated by 159 nucleotides MMP_RS05090: MMP_RS05090 - CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta, at 968,128 to 969,501 _RS05090 MMP_RS05095: MMP_RS05095 - CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon, at 969,513 to 970,031 _RS05095 MMP_RS05100: MMP_RS05100 - CO dehydrogenase/acetyl-CoA synthase complex subunit alpha, at 970,041 to 972,383 _RS05100 MMP_RS05105: MMP_RS05105 - thymidylate synthase, at 972,543 to 973,418 _RS05105 Position (kb) 970 971 972 973Strain fitness (log2 ratio) -1 0 1at 969.055 kb on - strand, within MMP_RS05090at 969.055 kb on - strand, within MMP_RS05090at 969.056 kb on + strand, within MMP_RS05090at 969.130 kb on - strand, within MMP_RS05090at 969.215 kb on - strand, within MMP_RS05090at 969.220 kb on + strand, within MMP_RS05090at 969.247 kb on - strand, within MMP_RS05090at 969.487 kb on - strandat 969.606 kb on - strand, within MMP_RS05095at 969.607 kb on + strand, within MMP_RS05095at 969.674 kb on + strand, within MMP_RS05095at 969.674 kb on + strand, within MMP_RS05095at 969.674 kb on + strand, within MMP_RS05095at 969.694 kb on + strand, within MMP_RS05095at 969.812 kb on + strand, within MMP_RS05095at 970.159 kb on + strandat 970.171 kb on + strandat 970.182 kb on - strandat 970.212 kb on - strandat 970.212 kb on - strandat 970.212 kb on - strandat 970.213 kb on + strandat 970.213 kb on + strandat 970.216 kb on - strandat 970.543 kb on + strand, within MMP_RS05100at 970.543 kb on + strand, within MMP_RS05100at 970.549 kb on - strand, within MMP_RS05100at 970.549 kb on - strand, within MMP_RS05100at 970.628 kb on - strand, within MMP_RS05100at 970.628 kb on - strand, within MMP_RS05100at 970.726 kb on - strand, within MMP_RS05100at 970.727 kb on + strand, within MMP_RS05100at 970.727 kb on + strand, within MMP_RS05100at 970.727 kb on + strand, within MMP_RS05100at 970.761 kb on - strand, within MMP_RS05100at 970.772 kb on + strand, within MMP_RS05100at 970.802 kb on - strand, within MMP_RS05100at 970.854 kb on - strand, within MMP_RS05100at 970.854 kb on - strand, within MMP_RS05100at 970.992 kb on - strand, within MMP_RS05100at 970.993 kb on + strand, within MMP_RS05100at 971.039 kb on + strand, within MMP_RS05100at 971.076 kb on + strand, within MMP_RS05100at 971.159 kb on - strand, within MMP_RS05100at 971.208 kb on - strand, within MMP_RS05100at 971.283 kb on + strand, within MMP_RS05100at 971.451 kb on - strand, within MMP_RS05100at 971.452 kb on + strand, within MMP_RS05100at 971.530 kb on - strand, within MMP_RS05100at 971.538 kb on - strand, within MMP_RS05100at 971.538 kb on - strand, within MMP_RS05100at 971.539 kb on + strand, within MMP_RS05100at 971.540 kb on - strand, within MMP_RS05100at 971.540 kb on - strand, within MMP_RS05100at 971.541 kb on + strand, within MMP_RS05100at 971.544 kb on - strand, within MMP_RS05100at 971.545 kb on + strand, within MMP_RS05100at 971.545 kb on + strand, within MMP_RS05100at 971.552 kb on - strand, within MMP_RS05100at 971.553 kb on + strand, within MMP_RS05100at 971.614 kb on + strand, within MMP_RS05100at 971.632 kb on + strand, within MMP_RS05100at 971.673 kb on - strand, within MMP_RS05100at 971.674 kb on + strand, within MMP_RS05100at 971.884 kb on + strand, within MMP_RS05100at 971.953 kb on + strand, within MMP_RS05100at 971.953 kb on + strand, within MMP_RS05100at 972.006 kb on - strand, within MMP_RS05100at 972.007 kb on + strand, within MMP_RS05100at 972.149 kb on - strandat 972.150 kb on + strandat 972.153 kb on - strandat 972.153 kb on - strandat 972.420 kb on - strandat 972.420 kb on - strandat 972.420 kb on - strandat 972.420 kb on - strandat 972.420 kb on - strandat 972.421 kb on + strandat 972.422 kb on - strandat 972.422 kb on - strandat 972.422 kb on - strandat 972.422 kb on - strandat 972.422 kb on - strandat 972.423 kb on + strandat 972.426 kb on - strandat 972.427 kb on + strandat 972.427 kb on + strandat 972.435 kb on + strandat 972.586 kb on + strandat 972.586 kb on + strandat 972.587 kb on - strandat 972.587 kb on - strandat 972.591 kb on - strandat 972.591 kb on - strandat 972.633 kb on - strand, within MMP_RS05105at 972.791 kb on - strand, within MMP_RS05105at 972.842 kb on - strand, within MMP_RS05105at 972.915 kb on - strand, within MMP_RS05105at 972.932 kb on + strand, within MMP_RS05105at 973.021 kb on - strand, within MMP_RS05105at 973.042 kb on - strand, within MMP_RS05105at 973.042 kb on - strand, within MMP_RS05105at 973.042 kb on - strand, within MMP_RS05105at 973.042 kb on - strand, within MMP_RS05105at 973.042 kb on - strand, within MMP_RS05105at 973.043 kb on + strand, within MMP_RS05105at 973.043 kb on + strand, within MMP_RS05105at 973.043 kb on + strand, within MMP_RS05105at 973.043 kb on + strand, within MMP_RS05105at 973.206 kb on - strand, within MMP_RS05105at 973.206 kb on - strand, within MMP_RS05105at 973.206 kb on - strand, within MMP_RS05105at 973.210 kb on + strand, within MMP_RS05105at 973.212 kb on - strand, within MMP_RS05105at 973.213 kb on + strand, within MMP_RS05105at 973.213 kb on + strand, within MMP_RS05105at 973.217 kb on - strand, within MMP_RS05105at 973.217 kb on - strand, within MMP_RS05105at 973.280 kb on + strand, within MMP_RS05105at 973.287 kb on - strand, within MMP_RS05105at 973.287 kb on - strand, within MMP_RS05105at 973.287 kb on - strand, within MMP_RS05105at 973.298 kb on - strand, within MMP_RS05105at 973.299 kb on + strand, within MMP_RS05105at 973.300 kb on - strand, within MMP_RS05105

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 1
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969,055 - MMP_RS05090 0.67 -0.2
969,055 - MMP_RS05090 0.67 -0.4
969,056 + MMP_RS05090 0.68 -0.5
969,130 - MMP_RS05090 0.73 -0.4
969,215 - MMP_RS05090 0.79 +0.0
969,220 + MMP_RS05090 0.79 -0.7
969,247 - MMP_RS05090 0.81 -0.6
969,487 - +0.0
969,606 - MMP_RS05095 0.18 -0.4
969,607 + MMP_RS05095 0.18 -0.3
969,674 + MMP_RS05095 0.31 -0.3
969,674 + MMP_RS05095 0.31 -0.4
969,674 + MMP_RS05095 0.31 -0.9
969,694 + MMP_RS05095 0.35 -0.2
969,812 + MMP_RS05095 0.58 -0.7
970,159 + -0.2
970,171 + -0.8
970,182 - -0.8
970,212 - -1.2
970,212 - -0.3
970,212 - -1.0
970,213 + -0.6
970,213 + -1.1
970,216 - -0.6
970,543 + MMP_RS05100 0.21 -0.1
970,543 + MMP_RS05100 0.21 -0.2
970,549 - MMP_RS05100 0.22 -0.3
970,549 - MMP_RS05100 0.22 -0.7
970,628 - MMP_RS05100 0.25 -0.1
970,628 - MMP_RS05100 0.25 -1.0
970,726 - MMP_RS05100 0.29 -0.7
970,727 + MMP_RS05100 0.29 -1.1
970,727 + MMP_RS05100 0.29 -0.3
970,727 + MMP_RS05100 0.29 -0.8
970,761 - MMP_RS05100 0.31 +0.0
970,772 + MMP_RS05100 0.31 -0.6
970,802 - MMP_RS05100 0.32 -1.1
970,854 - MMP_RS05100 0.35 -0.9
970,854 - MMP_RS05100 0.35 -0.3
970,992 - MMP_RS05100 0.41 -0.4
970,993 + MMP_RS05100 0.41 -0.4
971,039 + MMP_RS05100 0.43 -0.7
971,076 + MMP_RS05100 0.44 -0.5
971,159 - MMP_RS05100 0.48 -0.8
971,208 - MMP_RS05100 0.50 -0.6
971,283 + MMP_RS05100 0.53 -0.0
971,451 - MMP_RS05100 0.60 -0.5
971,452 + MMP_RS05100 0.60 -0.6
971,530 - MMP_RS05100 0.64 -0.2
971,538 - MMP_RS05100 0.64 -0.7
971,538 - MMP_RS05100 0.64 -0.5
971,539 + MMP_RS05100 0.64 +0.0
971,540 - MMP_RS05100 0.64 -1.6
971,540 - MMP_RS05100 0.64 -0.3
971,541 + MMP_RS05100 0.64 -0.3
971,544 - MMP_RS05100 0.64 -0.5
971,545 + MMP_RS05100 0.64 -0.5
971,545 + MMP_RS05100 0.64 -0.7
971,552 - MMP_RS05100 0.64 -0.6
971,553 + MMP_RS05100 0.65 -0.6
971,614 + MMP_RS05100 0.67 -0.2
971,632 + MMP_RS05100 0.68 -0.5
971,673 - MMP_RS05100 0.70 -0.5
971,674 + MMP_RS05100 0.70 -0.6
971,884 + MMP_RS05100 0.79 -0.4
971,953 + MMP_RS05100 0.82 -0.5
971,953 + MMP_RS05100 0.82 -0.2
972,006 - MMP_RS05100 0.84 -0.5
972,007 + MMP_RS05100 0.84 -0.6
972,149 - -0.7
972,150 + -0.4
972,153 - -0.1
972,153 - -0.3
972,420 - -0.5
972,420 - -0.9
972,420 - -0.5
972,420 - -0.7
972,420 - -0.7
972,421 + -0.5
972,422 - +0.1
972,422 - -0.4
972,422 - -0.7
972,422 - -0.4
972,422 - -0.7
972,423 + -0.8
972,426 - -0.5
972,427 + -0.4
972,427 + -0.3
972,435 + +0.1
972,586 + +0.7
972,586 + +0.1
972,587 - +0.2
972,587 - +0.3
972,591 - -0.2
972,591 - +0.3
972,633 - MMP_RS05105 0.10 +0.2
972,791 - MMP_RS05105 0.28 +0.1
972,842 - MMP_RS05105 0.34 +0.1
972,915 - MMP_RS05105 0.42 -0.4
972,932 + MMP_RS05105 0.44 +0.1
973,021 - MMP_RS05105 0.55 -0.8
973,042 - MMP_RS05105 0.57 -0.3
973,042 - MMP_RS05105 0.57 +0.2
973,042 - MMP_RS05105 0.57 -0.2
973,042 - MMP_RS05105 0.57 +0.1
973,042 - MMP_RS05105 0.57 +0.4
973,043 + MMP_RS05105 0.57 -0.1
973,043 + MMP_RS05105 0.57 -0.1
973,043 + MMP_RS05105 0.57 -0.1
973,043 + MMP_RS05105 0.57 -0.0
973,206 - MMP_RS05105 0.76 +0.2
973,206 - MMP_RS05105 0.76 -0.1
973,206 - MMP_RS05105 0.76 +0.0
973,210 + MMP_RS05105 0.76 +0.2
973,212 - MMP_RS05105 0.76 -0.4
973,213 + MMP_RS05105 0.76 +0.3
973,213 + MMP_RS05105 0.76 +0.1
973,217 - MMP_RS05105 0.77 -0.3
973,217 - MMP_RS05105 0.77 -0.2
973,280 + MMP_RS05105 0.84 +0.1
973,287 - MMP_RS05105 0.85 -0.1
973,287 - MMP_RS05105 0.85 -0.0
973,287 - MMP_RS05105 0.85 -0.3
973,298 - MMP_RS05105 0.86 -0.2
973,299 + MMP_RS05105 0.86 -0.1
973,300 - MMP_RS05105 0.86 +0.4

Or see this region's nucleotide sequence