Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS05075 and MMP_RS05080 are separated by 13 nucleotides MMP_RS05080 and MMP_RS05085 are separated by 14 nucleotides MMP_RS05085 and MMP_RS05090 are separated by 10 nucleotides
MMP_RS05075: MMP_RS05075 - acetyl-CoA decarbonylase/synthase complex subunit gamma, at 964,809 to 966,182
_RS05075
MMP_RS05080: MMP_RS05080 - acetyl-CoA decarbonylase/synthase complex subunit delta, at 966,196 to 967,350
_RS05080
MMP_RS05085: MMP_RS05085 - AAA family ATPase, at 967,365 to 968,117
_RS05085
MMP_RS05090: MMP_RS05090 - CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta, at 968,128 to 969,501
_RS05090
Position (kb) 966
967
968 Strain fitness (log2 ratio) -1
0
1 at 965.209 kb on - strand, within MMP_RS05075 at 965.252 kb on - strand, within MMP_RS05075 at 965.256 kb on - strand, within MMP_RS05075 at 965.265 kb on - strand, within MMP_RS05075 at 965.439 kb on + strand, within MMP_RS05075 at 965.477 kb on + strand, within MMP_RS05075 at 965.496 kb on - strand, within MMP_RS05075 at 965.496 kb on - strand, within MMP_RS05075 at 965.497 kb on + strand, within MMP_RS05075 at 965.497 kb on + strand, within MMP_RS05075 at 965.598 kb on - strand, within MMP_RS05075 at 965.621 kb on - strand, within MMP_RS05075 at 965.639 kb on + strand, within MMP_RS05075 at 965.790 kb on - strand, within MMP_RS05075 at 965.791 kb on + strand, within MMP_RS05075 at 965.890 kb on + strand, within MMP_RS05075 at 965.890 kb on + strand, within MMP_RS05075 at 965.890 kb on + strand, within MMP_RS05075 at 965.917 kb on - strand, within MMP_RS05075 at 965.918 kb on + strand, within MMP_RS05075 at 965.918 kb on + strand, within MMP_RS05075 at 965.921 kb on + strand, within MMP_RS05075 at 965.936 kb on - strand, within MMP_RS05075 at 965.936 kb on - strand, within MMP_RS05075 at 965.937 kb on + strand, within MMP_RS05075 at 965.938 kb on - strand, within MMP_RS05075 at 965.939 kb on + strand, within MMP_RS05075 at 965.939 kb on + strand, within MMP_RS05075 at 965.940 kb on - strand, within MMP_RS05075 at 965.941 kb on + strand, within MMP_RS05075 at 965.941 kb on + strand, within MMP_RS05075 at 965.941 kb on + strand, within MMP_RS05075 at 966.017 kb on - strand, within MMP_RS05075 at 966.047 kb on - strand at 966.108 kb on + strand at 966.161 kb on - strand at 966.161 kb on - strand at 966.209 kb on + strand at 966.222 kb on - strand at 966.223 kb on + strand at 966.252 kb on + strand at 966.313 kb on - strand, within MMP_RS05080 at 966.313 kb on - strand, within MMP_RS05080 at 966.505 kb on - strand, within MMP_RS05080 at 966.559 kb on - strand, within MMP_RS05080 at 966.559 kb on - strand, within MMP_RS05080 at 966.560 kb on + strand, within MMP_RS05080 at 966.578 kb on + strand, within MMP_RS05080 at 966.591 kb on - strand, within MMP_RS05080 at 966.622 kb on - strand, within MMP_RS05080 at 966.623 kb on + strand, within MMP_RS05080 at 966.623 kb on + strand, within MMP_RS05080 at 966.864 kb on - strand, within MMP_RS05080 at 966.910 kb on + strand, within MMP_RS05080 at 966.964 kb on - strand, within MMP_RS05080 at 966.964 kb on - strand, within MMP_RS05080 at 966.965 kb on + strand, within MMP_RS05080 at 966.965 kb on + strand, within MMP_RS05080 at 967.021 kb on - strand, within MMP_RS05080 at 967.022 kb on + strand, within MMP_RS05080 at 967.467 kb on + strand, within MMP_RS05085 at 967.483 kb on + strand, within MMP_RS05085 at 967.570 kb on - strand, within MMP_RS05085 at 967.732 kb on + strand, within MMP_RS05085 at 967.741 kb on - strand, within MMP_RS05085 at 967.742 kb on + strand, within MMP_RS05085 at 967.781 kb on - strand, within MMP_RS05085 at 967.795 kb on - strand, within MMP_RS05085 at 967.853 kb on - strand, within MMP_RS05085 at 967.871 kb on - strand, within MMP_RS05085 at 967.892 kb on - strand, within MMP_RS05085 at 967.910 kb on - strand, within MMP_RS05085 at 967.911 kb on + strand, within MMP_RS05085 at 968.129 kb on - strand at 968.130 kb on + strand at 968.297 kb on + strand, within MMP_RS05090
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 965,209 - MMP_RS05075 0.29 +0.0 965,252 - MMP_RS05075 0.32 -0.2 965,256 - MMP_RS05075 0.33 +0.0 965,265 - MMP_RS05075 0.33 -0.2 965,439 + MMP_RS05075 0.46 -0.4 965,477 + MMP_RS05075 0.49 -0.4 965,496 - MMP_RS05075 0.50 -0.7 965,496 - MMP_RS05075 0.50 -0.6 965,497 + MMP_RS05075 0.50 -0.8 965,497 + MMP_RS05075 0.50 -0.4 965,598 - MMP_RS05075 0.57 -0.9 965,621 - MMP_RS05075 0.59 -0.7 965,639 + MMP_RS05075 0.60 -0.8 965,790 - MMP_RS05075 0.71 -0.4 965,791 + MMP_RS05075 0.71 -1.2 965,890 + MMP_RS05075 0.79 -1.7 965,890 + MMP_RS05075 0.79 -0.3 965,890 + MMP_RS05075 0.79 -0.6 965,917 - MMP_RS05075 0.81 -0.5 965,918 + MMP_RS05075 0.81 -0.2 965,918 + MMP_RS05075 0.81 -1.0 965,921 + MMP_RS05075 0.81 -0.3 965,936 - MMP_RS05075 0.82 -0.2 965,936 - MMP_RS05075 0.82 -0.7 965,937 + MMP_RS05075 0.82 -0.4 965,938 - MMP_RS05075 0.82 -0.9 965,939 + MMP_RS05075 0.82 +0.0 965,939 + MMP_RS05075 0.82 -0.4 965,940 - MMP_RS05075 0.82 -0.5 965,941 + MMP_RS05075 0.82 -0.6 965,941 + MMP_RS05075 0.82 -0.6 965,941 + MMP_RS05075 0.82 -0.8 966,017 - MMP_RS05075 0.88 -0.4 966,047 - -0.6 966,108 + -0.5 966,161 - -0.6 966,161 - -1.2 966,209 + -0.9 966,222 - -0.3 966,223 + -0.5 966,252 + -0.3 966,313 - MMP_RS05080 0.10 -0.3 966,313 - MMP_RS05080 0.10 -0.7 966,505 - MMP_RS05080 0.27 -0.8 966,559 - MMP_RS05080 0.31 +0.0 966,559 - MMP_RS05080 0.31 -0.5 966,560 + MMP_RS05080 0.32 -0.2 966,578 + MMP_RS05080 0.33 -0.5 966,591 - MMP_RS05080 0.34 -1.1 966,622 - MMP_RS05080 0.37 -0.6 966,623 + MMP_RS05080 0.37 -0.4 966,623 + MMP_RS05080 0.37 -0.9 966,864 - MMP_RS05080 0.58 -0.1 966,910 + MMP_RS05080 0.62 +0.1 966,964 - MMP_RS05080 0.66 -0.4 966,964 - MMP_RS05080 0.66 -0.2 966,965 + MMP_RS05080 0.67 -0.5 966,965 + MMP_RS05080 0.67 -0.5 967,021 - MMP_RS05080 0.71 -0.3 967,022 + MMP_RS05080 0.72 -0.6 967,467 + MMP_RS05085 0.14 +0.4 967,483 + MMP_RS05085 0.16 -0.4 967,570 - MMP_RS05085 0.27 -0.4 967,732 + MMP_RS05085 0.49 -0.4 967,741 - MMP_RS05085 0.50 +0.9 967,742 + MMP_RS05085 0.50 -0.7 967,781 - MMP_RS05085 0.55 -0.5 967,795 - MMP_RS05085 0.57 -1.0 967,853 - MMP_RS05085 0.65 -0.5 967,871 - MMP_RS05085 0.67 -0.6 967,892 - MMP_RS05085 0.70 -0.8 967,910 - MMP_RS05085 0.72 -0.5 967,911 + MMP_RS05085 0.73 -0.8 968,129 - -0.8 968,130 + -0.5 968,297 + MMP_RS05090 0.12 -0.2
Or see this region's nucleotide sequence