Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05055

Experiment: Formate McCas no stress control 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05050 and MMP_RS05055 are separated by 219 nucleotidesMMP_RS05055 and MMP_RS05060 are separated by 0 nucleotidesMMP_RS05060 and MMP_RS05065 are separated by 4 nucleotides MMP_RS05050: MMP_RS05050 - substrate-binding domain-containing protein, at 961,541 to 962,392 _RS05050 MMP_RS05055: MMP_RS05055 - DUF166 domain-containing protein, at 962,612 to 963,268 _RS05055 MMP_RS05060: MMP_RS05060 - AAA family ATPase, at 963,269 to 964,051 _RS05060 MMP_RS05065: MMP_RS05065 - CooT family nickel-binding protein, at 964,056 to 964,235 _RS05065 Position (kb) 962 963 964Strain fitness (log2 ratio) -1 0 1at 961.636 kb on - strand, within MMP_RS05050at 961.637 kb on + strand, within MMP_RS05050at 961.677 kb on - strand, within MMP_RS05050at 961.699 kb on - strand, within MMP_RS05050at 961.702 kb on + strand, within MMP_RS05050at 961.721 kb on + strand, within MMP_RS05050at 961.724 kb on - strand, within MMP_RS05050at 961.724 kb on - strand, within MMP_RS05050at 961.725 kb on + strand, within MMP_RS05050at 961.725 kb on + strand, within MMP_RS05050at 961.725 kb on + strand, within MMP_RS05050at 961.731 kb on + strand, within MMP_RS05050at 961.766 kb on + strand, within MMP_RS05050at 961.787 kb on + strand, within MMP_RS05050at 961.892 kb on + strand, within MMP_RS05050at 961.988 kb on - strand, within MMP_RS05050at 962.159 kb on - strand, within MMP_RS05050at 962.379 kb on - strandat 962.395 kb on + strandat 962.395 kb on + strandat 962.452 kb on + strandat 962.460 kb on + strandat 962.463 kb on + strandat 962.467 kb on + strandat 962.487 kb on - strandat 962.488 kb on + strandat 962.488 kb on + strandat 962.499 kb on - strandat 962.545 kb on - strandat 962.564 kb on - strandat 962.565 kb on + strandat 962.566 kb on - strandat 962.566 kb on - strandat 962.566 kb on - strandat 962.567 kb on + strandat 962.568 kb on - strandat 962.568 kb on - strandat 962.569 kb on + strandat 962.569 kb on + strandat 962.569 kb on + strandat 962.569 kb on + strandat 962.569 kb on + strandat 962.573 kb on + strandat 962.573 kb on + strandat 962.598 kb on + strandat 962.620 kb on + strandat 962.625 kb on - strandat 962.663 kb on + strandat 962.735 kb on + strand, within MMP_RS05055at 962.779 kb on - strand, within MMP_RS05055at 962.788 kb on - strand, within MMP_RS05055at 962.789 kb on + strand, within MMP_RS05055at 962.792 kb on - strand, within MMP_RS05055at 962.792 kb on - strand, within MMP_RS05055at 962.792 kb on - strand, within MMP_RS05055at 962.792 kb on - strand, within MMP_RS05055at 962.793 kb on + strand, within MMP_RS05055at 962.794 kb on - strand, within MMP_RS05055at 962.794 kb on - strand, within MMP_RS05055at 962.794 kb on - strand, within MMP_RS05055at 962.794 kb on - strand, within MMP_RS05055at 962.794 kb on - strand, within MMP_RS05055at 962.794 kb on - strand, within MMP_RS05055at 962.795 kb on + strand, within MMP_RS05055at 962.795 kb on + strand, within MMP_RS05055at 962.799 kb on - strand, within MMP_RS05055at 962.837 kb on - strand, within MMP_RS05055at 962.838 kb on + strand, within MMP_RS05055at 962.852 kb on - strand, within MMP_RS05055at 963.023 kb on + strand, within MMP_RS05055at 963.039 kb on - strand, within MMP_RS05055at 963.040 kb on + strand, within MMP_RS05055at 963.047 kb on + strand, within MMP_RS05055at 963.047 kb on + strand, within MMP_RS05055at 963.049 kb on + strand, within MMP_RS05055at 963.049 kb on + strand, within MMP_RS05055at 963.049 kb on + strand, within MMP_RS05055at 963.137 kb on + strand, within MMP_RS05055at 963.366 kb on - strand, within MMP_RS05060at 963.366 kb on - strand, within MMP_RS05060at 963.367 kb on + strand, within MMP_RS05060at 963.408 kb on - strand, within MMP_RS05060at 963.409 kb on + strand, within MMP_RS05060at 963.448 kb on + strand, within MMP_RS05060at 963.548 kb on - strand, within MMP_RS05060at 963.637 kb on + strand, within MMP_RS05060at 963.745 kb on + strand, within MMP_RS05060at 963.778 kb on - strand, within MMP_RS05060at 963.847 kb on + strand, within MMP_RS05060at 963.916 kb on + strand, within MMP_RS05060at 963.919 kb on + strand, within MMP_RS05060at 963.945 kb on - strand, within MMP_RS05060at 963.946 kb on + strand, within MMP_RS05060at 964.013 kb on + strandat 964.060 kb on + strandat 964.075 kb on + strand, within MMP_RS05065at 964.075 kb on + strand, within MMP_RS05065at 964.075 kb on + strand, within MMP_RS05065at 964.138 kb on + strand, within MMP_RS05065at 964.197 kb on - strand, within MMP_RS05065at 964.235 kb on - strandat 964.267 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 1
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961,636 - MMP_RS05050 0.11 +0.2
961,637 + MMP_RS05050 0.11 -0.6
961,677 - MMP_RS05050 0.16 -0.1
961,699 - MMP_RS05050 0.19 +0.2
961,702 + MMP_RS05050 0.19 +0.1
961,721 + MMP_RS05050 0.21 +0.7
961,724 - MMP_RS05050 0.21 +0.2
961,724 - MMP_RS05050 0.21 -0.2
961,725 + MMP_RS05050 0.22 -0.1
961,725 + MMP_RS05050 0.22 -0.2
961,725 + MMP_RS05050 0.22 +0.4
961,731 + MMP_RS05050 0.22 -0.0
961,766 + MMP_RS05050 0.26 -0.6
961,787 + MMP_RS05050 0.29 -0.3
961,892 + MMP_RS05050 0.41 -0.1
961,988 - MMP_RS05050 0.52 +0.3
962,159 - MMP_RS05050 0.73 +0.5
962,379 - -0.5
962,395 + -0.1
962,395 + +0.3
962,452 + +0.1
962,460 + -0.3
962,463 + +0.2
962,467 + +0.2
962,487 - -0.2
962,488 + +0.4
962,488 + -0.5
962,499 - +0.2
962,545 - +0.5
962,564 - -0.1
962,565 + -0.6
962,566 - -0.2
962,566 - -0.2
962,566 - -0.2
962,567 + -0.5
962,568 - +0.5
962,568 - -0.1
962,569 + -0.1
962,569 + -0.1
962,569 + -0.6
962,569 + -0.4
962,569 + -0.3
962,573 + +0.4
962,573 + +0.2
962,598 + -0.1
962,620 + -0.4
962,625 - -0.7
962,663 + +0.2
962,735 + MMP_RS05055 0.19 -0.2
962,779 - MMP_RS05055 0.25 -0.5
962,788 - MMP_RS05055 0.27 +0.1
962,789 + MMP_RS05055 0.27 -0.9
962,792 - MMP_RS05055 0.27 -0.8
962,792 - MMP_RS05055 0.27 -0.7
962,792 - MMP_RS05055 0.27 -0.6
962,792 - MMP_RS05055 0.27 -0.3
962,793 + MMP_RS05055 0.28 +0.2
962,794 - MMP_RS05055 0.28 -0.1
962,794 - MMP_RS05055 0.28 -0.3
962,794 - MMP_RS05055 0.28 -0.5
962,794 - MMP_RS05055 0.28 -0.3
962,794 - MMP_RS05055 0.28 -0.5
962,794 - MMP_RS05055 0.28 -1.0
962,795 + MMP_RS05055 0.28 -0.5
962,795 + MMP_RS05055 0.28 -0.2
962,799 - MMP_RS05055 0.28 -0.2
962,837 - MMP_RS05055 0.34 -0.8
962,838 + MMP_RS05055 0.34 -0.6
962,852 - MMP_RS05055 0.37 -0.8
963,023 + MMP_RS05055 0.63 -0.9
963,039 - MMP_RS05055 0.65 -0.5
963,040 + MMP_RS05055 0.65 -0.6
963,047 + MMP_RS05055 0.66 -0.7
963,047 + MMP_RS05055 0.66 -1.1
963,049 + MMP_RS05055 0.67 -0.2
963,049 + MMP_RS05055 0.67 -0.4
963,049 + MMP_RS05055 0.67 -0.4
963,137 + MMP_RS05055 0.80 +0.5
963,366 - MMP_RS05060 0.12 -0.7
963,366 - MMP_RS05060 0.12 -0.5
963,367 + MMP_RS05060 0.13 -0.8
963,408 - MMP_RS05060 0.18 -1.7
963,409 + MMP_RS05060 0.18 -0.8
963,448 + MMP_RS05060 0.23 -0.6
963,548 - MMP_RS05060 0.36 -0.6
963,637 + MMP_RS05060 0.47 -0.5
963,745 + MMP_RS05060 0.61 -0.7
963,778 - MMP_RS05060 0.65 -1.0
963,847 + MMP_RS05060 0.74 -0.5
963,916 + MMP_RS05060 0.83 -0.3
963,919 + MMP_RS05060 0.83 -0.7
963,945 - MMP_RS05060 0.86 -0.7
963,946 + MMP_RS05060 0.86 -0.7
964,013 + -1.1
964,060 + -0.3
964,075 + MMP_RS05065 0.11 -0.4
964,075 + MMP_RS05065 0.11 -0.4
964,075 + MMP_RS05065 0.11 -0.3
964,138 + MMP_RS05065 0.46 -0.6
964,197 - MMP_RS05065 0.78 -0.3
964,235 - +0.0
964,267 - -0.5

Or see this region's nucleotide sequence