Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04970

Experiment: Formate McCas no stress control 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04960 and MMP_RS04965 are separated by 19 nucleotidesMMP_RS04965 and MMP_RS04970 are separated by 16 nucleotidesMMP_RS04970 and MMP_RS04975 are separated by 85 nucleotides MMP_RS04960: MMP_RS04960 - cytochrome c biogenesis CcdA family protein, at 946,238 to 946,891 _RS04960 MMP_RS04965: MMP_RS04965 - thioredoxin family protein, at 946,911 to 947,258 _RS04965 MMP_RS04970: MMP_RS04970 - F420-dependent thioredoxin reductase, at 947,275 to 948,177 _RS04970 MMP_RS04975: MMP_RS04975 - hypothetical protein, at 948,263 to 949,270 _RS04975 Position (kb) 947 948 949Strain fitness (log2 ratio) -1 0 1at 946.277 kb on - strandat 946.277 kb on - strandat 946.279 kb on - strandat 946.279 kb on - strandat 946.280 kb on + strandat 946.280 kb on + strandat 946.291 kb on - strandat 946.292 kb on + strandat 946.292 kb on + strandat 946.292 kb on + strandat 946.292 kb on + strandat 946.293 kb on - strandat 946.293 kb on - strandat 946.293 kb on - strandat 946.293 kb on - strandat 946.293 kb on - strandat 946.293 kb on - strandat 946.293 kb on - strandat 946.294 kb on + strandat 946.294 kb on + strandat 946.294 kb on + strandat 946.294 kb on + strandat 946.294 kb on + strandat 946.298 kb on - strandat 946.299 kb on + strandat 946.300 kb on - strandat 946.301 kb on + strandat 946.301 kb on + strandat 946.316 kb on - strand, within MMP_RS04960at 946.328 kb on - strand, within MMP_RS04960at 946.328 kb on - strand, within MMP_RS04960at 946.479 kb on + strand, within MMP_RS04960at 946.480 kb on - strand, within MMP_RS04960at 946.480 kb on - strand, within MMP_RS04960at 946.480 kb on - strand, within MMP_RS04960at 946.481 kb on + strand, within MMP_RS04960at 946.539 kb on + strand, within MMP_RS04960at 946.600 kb on - strand, within MMP_RS04960at 946.601 kb on + strand, within MMP_RS04960at 946.619 kb on + strand, within MMP_RS04960at 946.619 kb on + strand, within MMP_RS04960at 946.622 kb on - strand, within MMP_RS04960at 946.623 kb on + strand, within MMP_RS04960at 946.764 kb on + strand, within MMP_RS04960at 946.766 kb on - strand, within MMP_RS04960at 946.917 kb on + strandat 947.070 kb on - strand, within MMP_RS04965at 947.071 kb on + strand, within MMP_RS04965at 947.072 kb on - strand, within MMP_RS04965at 947.072 kb on - strand, within MMP_RS04965at 947.072 kb on - strand, within MMP_RS04965at 947.072 kb on - strand, within MMP_RS04965at 947.072 kb on - strand, within MMP_RS04965at 947.072 kb on - strand, within MMP_RS04965at 947.072 kb on - strand, within MMP_RS04965at 947.073 kb on + strand, within MMP_RS04965at 947.073 kb on + strand, within MMP_RS04965at 947.102 kb on - strand, within MMP_RS04965at 947.201 kb on - strand, within MMP_RS04965at 947.221 kb on + strand, within MMP_RS04965at 947.226 kb on - strandat 947.229 kb on + strandat 947.229 kb on + strandat 947.232 kb on - strandat 947.233 kb on + strandat 947.233 kb on + strandat 947.273 kb on - strandat 947.293 kb on - strandat 947.392 kb on + strand, within MMP_RS04970at 947.434 kb on + strand, within MMP_RS04970at 947.488 kb on - strand, within MMP_RS04970at 947.635 kb on - strand, within MMP_RS04970at 947.653 kb on - strand, within MMP_RS04970at 947.674 kb on - strand, within MMP_RS04970at 947.675 kb on + strand, within MMP_RS04970at 947.675 kb on + strand, within MMP_RS04970at 947.694 kb on - strand, within MMP_RS04970at 947.695 kb on + strand, within MMP_RS04970at 947.706 kb on - strand, within MMP_RS04970at 947.706 kb on - strand, within MMP_RS04970at 947.708 kb on - strand, within MMP_RS04970at 947.708 kb on - strand, within MMP_RS04970at 947.708 kb on - strand, within MMP_RS04970at 947.786 kb on + strand, within MMP_RS04970at 947.828 kb on + strand, within MMP_RS04970at 947.847 kb on - strand, within MMP_RS04970at 947.847 kb on - strand, within MMP_RS04970at 947.847 kb on - strand, within MMP_RS04970at 947.847 kb on - strand, within MMP_RS04970at 947.863 kb on - strand, within MMP_RS04970at 947.863 kb on - strand, within MMP_RS04970at 947.864 kb on + strand, within MMP_RS04970at 947.866 kb on - strand, within MMP_RS04970at 947.883 kb on + strand, within MMP_RS04970at 947.925 kb on - strand, within MMP_RS04970at 947.930 kb on + strand, within MMP_RS04970at 948.172 kb on - strandat 948.202 kb on - strandat 948.203 kb on + strandat 948.220 kb on + strandat 948.221 kb on - strandat 948.223 kb on - strandat 948.223 kb on - strandat 948.223 kb on - strandat 948.228 kb on - strandat 948.228 kb on - strandat 948.229 kb on + strandat 948.272 kb on + strandat 948.305 kb on + strandat 948.461 kb on - strand, within MMP_RS04975at 948.602 kb on - strand, within MMP_RS04975at 948.602 kb on - strand, within MMP_RS04975at 948.604 kb on - strand, within MMP_RS04975at 948.752 kb on - strand, within MMP_RS04975at 948.791 kb on - strand, within MMP_RS04975at 948.791 kb on - strand, within MMP_RS04975at 948.792 kb on + strand, within MMP_RS04975at 948.798 kb on - strand, within MMP_RS04975at 948.798 kb on - strand, within MMP_RS04975at 948.798 kb on - strand, within MMP_RS04975at 948.799 kb on + strand, within MMP_RS04975at 948.799 kb on + strand, within MMP_RS04975at 948.799 kb on + strand, within MMP_RS04975at 948.803 kb on - strand, within MMP_RS04975at 948.803 kb on - strand, within MMP_RS04975at 948.803 kb on - strand, within MMP_RS04975at 948.803 kb on - strand, within MMP_RS04975at 948.804 kb on + strand, within MMP_RS04975at 948.806 kb on + strand, within MMP_RS04975at 948.806 kb on + strand, within MMP_RS04975at 948.806 kb on + strand, within MMP_RS04975at 948.826 kb on - strand, within MMP_RS04975at 948.831 kb on - strand, within MMP_RS04975at 948.831 kb on - strand, within MMP_RS04975at 948.832 kb on + strand, within MMP_RS04975at 948.840 kb on + strand, within MMP_RS04975at 948.904 kb on + strand, within MMP_RS04975at 948.904 kb on + strand, within MMP_RS04975at 948.904 kb on + strand, within MMP_RS04975at 948.928 kb on + strand, within MMP_RS04975at 948.938 kb on - strand, within MMP_RS04975at 948.939 kb on + strand, within MMP_RS04975at 948.943 kb on - strand, within MMP_RS04975at 948.987 kb on - strand, within MMP_RS04975at 949.010 kb on - strand, within MMP_RS04975at 949.022 kb on - strand, within MMP_RS04975at 949.039 kb on - strand, within MMP_RS04975at 949.040 kb on + strand, within MMP_RS04975at 949.040 kb on + strand, within MMP_RS04975at 949.048 kb on + strand, within MMP_RS04975at 949.048 kb on + strand, within MMP_RS04975at 949.048 kb on + strand, within MMP_RS04975at 949.093 kb on - strand, within MMP_RS04975at 949.097 kb on + strand, within MMP_RS04975

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 1
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946,277 - +0.1
946,277 - -0.3
946,279 - +0.3
946,279 - +0.4
946,280 + +0.7
946,280 + -0.4
946,291 - +0.2
946,292 + +0.2
946,292 + -0.5
946,292 + -0.3
946,292 + +0.4
946,293 - -0.2
946,293 - +0.1
946,293 - +0.9
946,293 - +0.6
946,293 - -0.1
946,293 - +0.7
946,293 - +0.2
946,294 + -0.2
946,294 + +0.2
946,294 + -0.2
946,294 + +0.1
946,294 + -0.1
946,298 - -0.3
946,299 + +0.3
946,300 - -0.0
946,301 + -0.3
946,301 + +0.0
946,316 - MMP_RS04960 0.12 -0.3
946,328 - MMP_RS04960 0.14 +0.0
946,328 - MMP_RS04960 0.14 -0.2
946,479 + MMP_RS04960 0.37 -0.3
946,480 - MMP_RS04960 0.37 +0.5
946,480 - MMP_RS04960 0.37 -0.3
946,480 - MMP_RS04960 0.37 +0.5
946,481 + MMP_RS04960 0.37 +0.1
946,539 + MMP_RS04960 0.46 +0.1
946,600 - MMP_RS04960 0.55 +0.3
946,601 + MMP_RS04960 0.56 -0.1
946,619 + MMP_RS04960 0.58 +0.1
946,619 + MMP_RS04960 0.58 -0.0
946,622 - MMP_RS04960 0.59 +0.0
946,623 + MMP_RS04960 0.59 +0.5
946,764 + MMP_RS04960 0.80 +0.3
946,766 - MMP_RS04960 0.81 -0.3
946,917 + +0.0
947,070 - MMP_RS04965 0.46 -0.2
947,071 + MMP_RS04965 0.46 -0.0
947,072 - MMP_RS04965 0.46 -0.0
947,072 - MMP_RS04965 0.46 -0.2
947,072 - MMP_RS04965 0.46 -0.0
947,072 - MMP_RS04965 0.46 -0.2
947,072 - MMP_RS04965 0.46 +0.2
947,072 - MMP_RS04965 0.46 +0.1
947,072 - MMP_RS04965 0.46 +0.2
947,073 + MMP_RS04965 0.47 -0.0
947,073 + MMP_RS04965 0.47 +0.2
947,102 - MMP_RS04965 0.55 +0.2
947,201 - MMP_RS04965 0.83 +0.6
947,221 + MMP_RS04965 0.89 -0.2
947,226 - +0.1
947,229 + +0.3
947,229 + -0.2
947,232 - +0.2
947,233 + -0.3
947,233 + +0.4
947,273 - -0.3
947,293 - +0.3
947,392 + MMP_RS04970 0.13 +0.5
947,434 + MMP_RS04970 0.18 -0.2
947,488 - MMP_RS04970 0.24 +0.2
947,635 - MMP_RS04970 0.40 +0.7
947,653 - MMP_RS04970 0.42 -0.3
947,674 - MMP_RS04970 0.44 -0.0
947,675 + MMP_RS04970 0.44 +0.1
947,675 + MMP_RS04970 0.44 -0.1
947,694 - MMP_RS04970 0.46 -0.1
947,695 + MMP_RS04970 0.47 +0.4
947,706 - MMP_RS04970 0.48 -0.2
947,706 - MMP_RS04970 0.48 +0.2
947,708 - MMP_RS04970 0.48 +0.1
947,708 - MMP_RS04970 0.48 +0.4
947,708 - MMP_RS04970 0.48 +0.2
947,786 + MMP_RS04970 0.57 -0.1
947,828 + MMP_RS04970 0.61 +0.2
947,847 - MMP_RS04970 0.63 -0.0
947,847 - MMP_RS04970 0.63 -0.3
947,847 - MMP_RS04970 0.63 +0.2
947,847 - MMP_RS04970 0.63 +0.2
947,863 - MMP_RS04970 0.65 -0.5
947,863 - MMP_RS04970 0.65 -0.1
947,864 + MMP_RS04970 0.65 +0.3
947,866 - MMP_RS04970 0.65 +0.1
947,883 + MMP_RS04970 0.67 +0.2
947,925 - MMP_RS04970 0.72 -0.2
947,930 + MMP_RS04970 0.73 -0.0
948,172 - -0.0
948,202 - -0.2
948,203 + -0.5
948,220 + -0.4
948,221 - +0.7
948,223 - +0.6
948,223 - +0.1
948,223 - +0.5
948,228 - -0.0
948,228 - +0.9
948,229 + +0.6
948,272 + +0.5
948,305 + +0.4
948,461 - MMP_RS04975 0.20 -0.1
948,602 - MMP_RS04975 0.34 +0.3
948,602 - MMP_RS04975 0.34 -0.0
948,604 - MMP_RS04975 0.34 -0.0
948,752 - MMP_RS04975 0.49 -0.2
948,791 - MMP_RS04975 0.52 -0.4
948,791 - MMP_RS04975 0.52 +0.4
948,792 + MMP_RS04975 0.52 +0.1
948,798 - MMP_RS04975 0.53 -1.0
948,798 - MMP_RS04975 0.53 -0.1
948,798 - MMP_RS04975 0.53 -0.2
948,799 + MMP_RS04975 0.53 +0.1
948,799 + MMP_RS04975 0.53 -0.2
948,799 + MMP_RS04975 0.53 -0.2
948,803 - MMP_RS04975 0.54 +0.0
948,803 - MMP_RS04975 0.54 -0.2
948,803 - MMP_RS04975 0.54 +0.4
948,803 - MMP_RS04975 0.54 +0.2
948,804 + MMP_RS04975 0.54 -0.3
948,806 + MMP_RS04975 0.54 +0.3
948,806 + MMP_RS04975 0.54 -0.6
948,806 + MMP_RS04975 0.54 +0.1
948,826 - MMP_RS04975 0.56 -0.2
948,831 - MMP_RS04975 0.56 +0.0
948,831 - MMP_RS04975 0.56 -0.3
948,832 + MMP_RS04975 0.56 +0.5
948,840 + MMP_RS04975 0.57 +0.0
948,904 + MMP_RS04975 0.64 +0.0
948,904 + MMP_RS04975 0.64 -0.1
948,904 + MMP_RS04975 0.64 +0.3
948,928 + MMP_RS04975 0.66 +0.1
948,938 - MMP_RS04975 0.67 +0.1
948,939 + MMP_RS04975 0.67 +0.5
948,943 - MMP_RS04975 0.67 +0.7
948,987 - MMP_RS04975 0.72 +0.1
949,010 - MMP_RS04975 0.74 +0.6
949,022 - MMP_RS04975 0.75 -0.2
949,039 - MMP_RS04975 0.77 +0.1
949,040 + MMP_RS04975 0.77 +0.4
949,040 + MMP_RS04975 0.77 +0.1
949,048 + MMP_RS04975 0.78 +0.6
949,048 + MMP_RS04975 0.78 -0.1
949,048 + MMP_RS04975 0.78 +0.2
949,093 - MMP_RS04975 0.82 +0.0
949,097 + MMP_RS04975 0.83 -0.1

Or see this region's nucleotide sequence