Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04950 and MMP_RS04955 are separated by 46 nucleotides MMP_RS04955 and MMP_RS04960 are separated by 1 nucleotides MMP_RS04960 and MMP_RS04965 are separated by 19 nucleotides
MMP_RS04950: MMP_RS04950 - succinate--CoA ligase subunit alpha, at 942,855 to 943,718
_RS04950
MMP_RS04955: MMP_RS04955 - DNA topoisomerase I, at 943,765 to 946,236
_RS04955
MMP_RS04960: MMP_RS04960 - cytochrome c biogenesis CcdA family protein, at 946,238 to 946,891
_RS04960
MMP_RS04965: MMP_RS04965 - thioredoxin family protein, at 946,911 to 947,258
_RS04965
Position (kb) 943
944
945
946
947 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 942.772 kb on - strand at 942.773 kb on + strand at 942.775 kb on + strand at 942.776 kb on - strand at 942.776 kb on - strand at 942.777 kb on + strand at 942.787 kb on + strand at 942.825 kb on + strand at 942.841 kb on + strand at 943.069 kb on - strand at 943.099 kb on + strand at 943.106 kb on - strand at 943.277 kb on + strand at 943.697 kb on + strand at 943.717 kb on + strand at 943.751 kb on + strand at 943.776 kb on + strand at 943.890 kb on - strand at 943.891 kb on + strand at 943.893 kb on + strand at 943.899 kb on + strand at 943.919 kb on - strand at 943.921 kb on - strand at 944.029 kb on + strand, within MMP_RS04955 at 944.279 kb on - strand, within MMP_RS04955 at 944.310 kb on + strand, within MMP_RS04955 at 944.453 kb on - strand, within MMP_RS04955 at 944.502 kb on - strand, within MMP_RS04955 at 944.737 kb on - strand, within MMP_RS04955 at 944.737 kb on - strand, within MMP_RS04955 at 944.738 kb on + strand, within MMP_RS04955 at 944.738 kb on + strand, within MMP_RS04955 at 944.738 kb on + strand, within MMP_RS04955 at 944.738 kb on + strand, within MMP_RS04955 at 944.738 kb on + strand, within MMP_RS04955 at 944.789 kb on + strand, within MMP_RS04955 at 944.907 kb on + strand, within MMP_RS04955 at 945.508 kb on + strand, within MMP_RS04955 at 945.726 kb on + strand, within MMP_RS04955 at 945.774 kb on - strand, within MMP_RS04955 at 945.894 kb on - strand, within MMP_RS04955 at 945.895 kb on + strand, within MMP_RS04955 at 945.899 kb on + strand, within MMP_RS04955 at 945.899 kb on + strand, within MMP_RS04955 at 945.976 kb on + strand, within MMP_RS04955 at 946.035 kb on - strand at 946.080 kb on - strand at 946.120 kb on + strand at 946.150 kb on + strand at 946.155 kb on - strand at 946.234 kb on - strand at 946.246 kb on - strand at 946.247 kb on + strand at 946.247 kb on + strand at 946.250 kb on - strand at 946.250 kb on - strand at 946.251 kb on + strand at 946.253 kb on - strand at 946.277 kb on - strand at 946.277 kb on - strand at 946.279 kb on - strand at 946.279 kb on - strand at 946.280 kb on + strand at 946.280 kb on + strand at 946.291 kb on - strand at 946.292 kb on + strand at 946.292 kb on + strand at 946.292 kb on + strand at 946.292 kb on + strand at 946.293 kb on - strand at 946.293 kb on - strand at 946.293 kb on - strand at 946.293 kb on - strand at 946.293 kb on - strand at 946.293 kb on - strand at 946.293 kb on - strand at 946.294 kb on + strand at 946.294 kb on + strand at 946.294 kb on + strand at 946.294 kb on + strand at 946.294 kb on + strand at 946.298 kb on - strand at 946.299 kb on + strand at 946.300 kb on - strand at 946.301 kb on + strand at 946.301 kb on + strand at 946.316 kb on - strand, within MMP_RS04960 at 946.328 kb on - strand, within MMP_RS04960 at 946.328 kb on - strand, within MMP_RS04960 at 946.479 kb on + strand, within MMP_RS04960 at 946.480 kb on - strand, within MMP_RS04960 at 946.480 kb on - strand, within MMP_RS04960 at 946.480 kb on - strand, within MMP_RS04960 at 946.481 kb on + strand, within MMP_RS04960 at 946.539 kb on + strand, within MMP_RS04960 at 946.600 kb on - strand, within MMP_RS04960 at 946.601 kb on + strand, within MMP_RS04960 at 946.619 kb on + strand, within MMP_RS04960 at 946.619 kb on + strand, within MMP_RS04960 at 946.622 kb on - strand, within MMP_RS04960 at 946.623 kb on + strand, within MMP_RS04960 at 946.764 kb on + strand, within MMP_RS04960 at 946.766 kb on - strand, within MMP_RS04960 at 946.917 kb on + strand at 947.070 kb on - strand, within MMP_RS04965 at 947.071 kb on + strand, within MMP_RS04965 at 947.072 kb on - strand, within MMP_RS04965 at 947.072 kb on - strand, within MMP_RS04965 at 947.072 kb on - strand, within MMP_RS04965 at 947.072 kb on - strand, within MMP_RS04965 at 947.072 kb on - strand, within MMP_RS04965 at 947.072 kb on - strand, within MMP_RS04965 at 947.072 kb on - strand, within MMP_RS04965 at 947.073 kb on + strand, within MMP_RS04965 at 947.073 kb on + strand, within MMP_RS04965 at 947.102 kb on - strand, within MMP_RS04965 at 947.201 kb on - strand, within MMP_RS04965 at 947.221 kb on + strand, within MMP_RS04965 at 947.226 kb on - strand at 947.229 kb on + strand at 947.229 kb on + strand at 947.232 kb on - strand at 947.233 kb on + strand at 947.233 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 942,772 - -0.6 942,773 + -0.6 942,775 + -1.1 942,776 - -1.2 942,776 - -3.2 942,777 + -3.1 942,787 + -1.2 942,825 + -1.8 942,841 + +0.2 943,069 - -3.1 943,099 + -2.5 943,106 - -1.9 943,277 + -1.4 943,697 + -2.5 943,717 + +0.3 943,751 + -0.8 943,776 + -1.1 943,890 - +0.4 943,891 + -1.2 943,893 + -1.3 943,899 + -0.1 943,919 - +0.9 943,921 - -0.6 944,029 + MMP_RS04955 0.11 -0.1 944,279 - MMP_RS04955 0.21 -0.6 944,310 + MMP_RS04955 0.22 -2.2 944,453 - MMP_RS04955 0.28 -2.2 944,502 - MMP_RS04955 0.30 -0.5 944,737 - MMP_RS04955 0.39 -1.4 944,737 - MMP_RS04955 0.39 -0.2 944,738 + MMP_RS04955 0.39 -0.2 944,738 + MMP_RS04955 0.39 -3.0 944,738 + MMP_RS04955 0.39 -2.3 944,738 + MMP_RS04955 0.39 -1.1 944,738 + MMP_RS04955 0.39 -1.8 944,789 + MMP_RS04955 0.41 -1.0 944,907 + MMP_RS04955 0.46 -3.5 945,508 + MMP_RS04955 0.71 +0.9 945,726 + MMP_RS04955 0.79 -0.6 945,774 - MMP_RS04955 0.81 -0.5 945,894 - MMP_RS04955 0.86 +0.2 945,895 + MMP_RS04955 0.86 +0.4 945,899 + MMP_RS04955 0.86 +0.2 945,899 + MMP_RS04955 0.86 +0.3 945,976 + MMP_RS04955 0.89 +0.4 946,035 - -0.4 946,080 - -0.1 946,120 + +0.1 946,150 + +0.3 946,155 - +0.2 946,234 - -0.2 946,246 - -0.4 946,247 + -0.1 946,247 + +0.3 946,250 - -0.0 946,250 - +0.1 946,251 + +0.2 946,253 - -0.2 946,277 - +0.1 946,277 - -0.3 946,279 - +0.3 946,279 - +0.4 946,280 + +0.7 946,280 + -0.4 946,291 - +0.2 946,292 + +0.2 946,292 + -0.5 946,292 + -0.3 946,292 + +0.4 946,293 - -0.2 946,293 - +0.1 946,293 - +0.9 946,293 - +0.6 946,293 - -0.1 946,293 - +0.7 946,293 - +0.2 946,294 + -0.2 946,294 + +0.2 946,294 + -0.2 946,294 + +0.1 946,294 + -0.1 946,298 - -0.3 946,299 + +0.3 946,300 - -0.0 946,301 + -0.3 946,301 + +0.0 946,316 - MMP_RS04960 0.12 -0.3 946,328 - MMP_RS04960 0.14 +0.0 946,328 - MMP_RS04960 0.14 -0.2 946,479 + MMP_RS04960 0.37 -0.3 946,480 - MMP_RS04960 0.37 +0.5 946,480 - MMP_RS04960 0.37 -0.3 946,480 - MMP_RS04960 0.37 +0.5 946,481 + MMP_RS04960 0.37 +0.1 946,539 + MMP_RS04960 0.46 +0.1 946,600 - MMP_RS04960 0.55 +0.3 946,601 + MMP_RS04960 0.56 -0.1 946,619 + MMP_RS04960 0.58 +0.1 946,619 + MMP_RS04960 0.58 -0.0 946,622 - MMP_RS04960 0.59 +0.0 946,623 + MMP_RS04960 0.59 +0.5 946,764 + MMP_RS04960 0.80 +0.3 946,766 - MMP_RS04960 0.81 -0.3 946,917 + +0.0 947,070 - MMP_RS04965 0.46 -0.2 947,071 + MMP_RS04965 0.46 -0.0 947,072 - MMP_RS04965 0.46 -0.0 947,072 - MMP_RS04965 0.46 -0.2 947,072 - MMP_RS04965 0.46 -0.0 947,072 - MMP_RS04965 0.46 -0.2 947,072 - MMP_RS04965 0.46 +0.2 947,072 - MMP_RS04965 0.46 +0.1 947,072 - MMP_RS04965 0.46 +0.2 947,073 + MMP_RS04965 0.47 -0.0 947,073 + MMP_RS04965 0.47 +0.2 947,102 - MMP_RS04965 0.55 +0.2 947,201 - MMP_RS04965 0.83 +0.6 947,221 + MMP_RS04965 0.89 -0.2 947,226 - +0.1 947,229 + +0.3 947,229 + -0.2 947,232 - +0.2 947,233 + -0.3 947,233 + +0.4
Or see this region's nucleotide sequence