Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04870

Experiment: Formate McCas no stress control 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas no stress control 1
925,558	+				-0.6
925,561	-				+0.4
925,562	+				+0.2
925,598	-				-0.3
925,599	+				-1.0
925,630	+				-2.2
925,701	+				-1.8
925,755	-				-1.2
925,755	-				-1.0
925,932	-				-2.5
925,933	+				-1.4
925,938	+				-1.3
925,951	+				-1.5
926,001	-				-1.4
926,002	+				-1.3
926,022	-				-0.9
926,045	+				-0.9
926,057	-				-0.9
926,088	-				-1.1
926,145	+				-1.7
926,145	+				-2.2
926,147	+				-1.3
926,148	-				-1.9
926,213	-				+0.6
926,359	+				-1.5
926,384	-				-0.5
926,385	+				-0.1
926,393	-				-0.3
926,417	-				-0.7
926,431	-				-0.7
926,432	+				-1.0
926,440	+				-1.1
926,440	+				-0.2
926,440	+				-1.3
926,517	+		MMP_RS04870	0.20	-0.7
926,568	+		MMP_RS04870	0.28	-0.6
926,589	+		MMP_RS04870	0.31	-1.0
926,620	-		MMP_RS04870	0.36	+0.0
926,621	+		MMP_RS04870	0.36	-0.2
926,635	+		MMP_RS04870	0.38	-1.0
926,636	-		MMP_RS04870	0.38	-1.0
926,637	+		MMP_RS04870	0.38	-1.9
926,808	+		MMP_RS04870	0.63	-1.5
926,912	-		MMP_RS04870	0.79	-0.1
927,073	-				-0.4
927,073	-				-0.2
927,073	-				-1.7
927,074	+				-1.8
927,076	+				-1.3
927,083	+				+0.3
927,118	+		MMP_RS04875	0.14	-1.0
927,158	+		MMP_RS04875	0.27	-1.3
927,294	+		MMP_RS04875	0.75	+0.9
927,313	-		MMP_RS04875	0.81	-1.0
927,314	+		MMP_RS04875	0.82	-1.5
927,317	-		MMP_RS04875	0.83	-0.3
927,318	+		MMP_RS04875	0.83	-1.2
927,318	+		MMP_RS04875	0.83	-0.8
927,352	-				-0.8
927,353	+				-0.9
927,367	-				-1.1
927,367	-				-0.5
927,368	+				-0.8
927,368	+				+0.1
927,368	+				-0.5
927,369	-				-0.5
927,369	-				-0.4
927,369	-				+0.1
927,370	+				-0.9
927,370	+				-1.6
927,370	+				-0.8
927,386	-				-0.9
927,392	-				-0.0
927,393	+				-0.4
927,397	-				-0.3
927,398	+				-0.6
927,398	+				-0.4
927,398	+				-1.4
927,411	-				-0.2
927,411	-				-0.2
927,411	-				-0.6
927,412	+				+0.2
927,412	+				-0.0
927,412	+				-0.2
927,412	+				-0.3
927,412	+				-0.6
927,412	+				-0.6
927,413	-				-0.1
927,413	-				+0.0
927,413	-				+0.2
927,414	+				-0.2
927,414	+				-0.4
927,414	+				-0.2
927,414	+				+0.0
927,425	-				-0.1
927,606	+		MMP_RS04880	0.12	-0.3
927,675	+		MMP_RS04880	0.16	+0.1
927,678	+		MMP_RS04880	0.16	+0.3
927,695	+		MMP_RS04880	0.17	-0.0
927,895	-		MMP_RS04880	0.31	+0.1
927,899	-		MMP_RS04880	0.31	+0.1
927,996	-		MMP_RS04880	0.37	+0.4
927,996	-		MMP_RS04880	0.37	+0.1
928,000	-		MMP_RS04880	0.38	-0.5
928,001	+		MMP_RS04880	0.38	-0.0
928,001	+		MMP_RS04880	0.38	-0.1
928,001	+		MMP_RS04880	0.38	+0.4
928,001	+		MMP_RS04880	0.38	-0.1
928,001	+		MMP_RS04880	0.38	-0.4