Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04445

Experiment: Formate McCas no stress control 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04440 and MMP_RS04445 are separated by 42 nucleotidesMMP_RS04445 and MMP_RS04450 are separated by 9 nucleotidesMMP_RS04450 and MMP_RS04455 are separated by 49 nucleotides MMP_RS04440: MMP_RS04440 - nitrogenase iron protein, at 844,090 to 844,917 _RS04440 MMP_RS04445: MMP_RS04445 - P-II family nitrogen regulator, at 844,960 to 845,277 _RS04445 MMP_RS04450: MMP_RS04450 - P-II family nitrogen regulator, at 845,287 to 845,652 _RS04450 MMP_RS04455: MMP_RS04455 - nitrogenase subunit alpha, at 845,702 to 847,135 _RS04455 Position (kb) 844 845 846Strain fitness (log2 ratio) -1 0 1at 843.997 kb on - strandat 843.998 kb on + strandat 843.998 kb on + strandat 843.998 kb on + strandat 844.072 kb on - strandat 844.072 kb on - strandat 844.072 kb on - strandat 844.072 kb on - strandat 844.072 kb on - strandat 844.073 kb on + strandat 844.073 kb on + strandat 844.073 kb on + strandat 844.073 kb on + strandat 844.074 kb on - strandat 844.074 kb on - strandat 844.074 kb on - strandat 844.075 kb on + strandat 844.075 kb on + strandat 844.076 kb on - strandat 844.076 kb on - strandat 844.076 kb on - strandat 844.077 kb on + strandat 844.077 kb on + strandat 844.112 kb on + strandat 844.225 kb on + strand, within MMP_RS04440at 844.256 kb on - strand, within MMP_RS04440at 844.256 kb on - strand, within MMP_RS04440at 844.257 kb on + strand, within MMP_RS04440at 844.269 kb on - strand, within MMP_RS04440at 844.269 kb on - strand, within MMP_RS04440at 844.300 kb on + strand, within MMP_RS04440at 844.337 kb on - strand, within MMP_RS04440at 844.337 kb on - strand, within MMP_RS04440at 844.481 kb on - strand, within MMP_RS04440at 844.532 kb on + strand, within MMP_RS04440at 844.655 kb on - strand, within MMP_RS04440at 844.673 kb on - strand, within MMP_RS04440at 844.808 kb on + strand, within MMP_RS04440at 844.880 kb on - strandat 844.889 kb on - strandat 844.910 kb on - strandat 844.911 kb on + strandat 844.919 kb on - strandat 844.930 kb on + strandat 844.930 kb on + strandat 844.933 kb on - strandat 844.934 kb on + strandat 845.009 kb on - strand, within MMP_RS04445at 845.086 kb on + strand, within MMP_RS04445at 845.086 kb on + strand, within MMP_RS04445at 845.105 kb on + strand, within MMP_RS04445at 845.139 kb on + strand, within MMP_RS04445at 845.165 kb on - strand, within MMP_RS04445at 845.191 kb on - strand, within MMP_RS04445at 845.191 kb on - strand, within MMP_RS04445at 845.214 kb on - strand, within MMP_RS04445at 845.245 kb on - strand, within MMP_RS04445at 845.273 kb on - strandat 845.276 kb on + strandat 845.284 kb on - strandat 845.284 kb on - strandat 845.287 kb on + strandat 845.453 kb on - strand, within MMP_RS04450at 845.476 kb on - strand, within MMP_RS04450at 845.476 kb on - strand, within MMP_RS04450at 845.476 kb on - strand, within MMP_RS04450at 845.476 kb on - strand, within MMP_RS04450at 845.476 kb on - strand, within MMP_RS04450at 845.477 kb on + strand, within MMP_RS04450at 845.501 kb on - strand, within MMP_RS04450at 845.502 kb on + strand, within MMP_RS04450at 845.502 kb on + strand, within MMP_RS04450at 845.502 kb on + strand, within MMP_RS04450at 845.531 kb on - strand, within MMP_RS04450at 845.531 kb on - strand, within MMP_RS04450at 845.545 kb on + strand, within MMP_RS04450at 845.552 kb on - strand, within MMP_RS04450at 845.553 kb on + strand, within MMP_RS04450at 845.557 kb on + strand, within MMP_RS04450at 845.592 kb on + strand, within MMP_RS04450at 845.759 kb on - strandat 845.760 kb on + strandat 845.807 kb on + strandat 845.807 kb on + strandat 845.807 kb on + strandat 845.830 kb on - strandat 845.830 kb on - strandat 845.831 kb on + strandat 845.886 kb on - strand, within MMP_RS04455at 845.895 kb on - strand, within MMP_RS04455at 845.895 kb on - strand, within MMP_RS04455at 845.896 kb on + strand, within MMP_RS04455at 845.896 kb on + strand, within MMP_RS04455at 845.905 kb on + strand, within MMP_RS04455at 845.907 kb on - strand, within MMP_RS04455at 845.926 kb on - strand, within MMP_RS04455at 845.927 kb on + strand, within MMP_RS04455at 845.992 kb on + strand, within MMP_RS04455at 846.040 kb on + strand, within MMP_RS04455at 846.040 kb on + strand, within MMP_RS04455at 846.131 kb on - strand, within MMP_RS04455at 846.131 kb on - strand, within MMP_RS04455at 846.132 kb on + strand, within MMP_RS04455at 846.148 kb on - strand, within MMP_RS04455at 846.188 kb on + strand, within MMP_RS04455

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 1
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843,997 - +0.4
843,998 + +0.4
843,998 + -0.0
843,998 + +0.5
844,072 - +0.2
844,072 - +0.2
844,072 - +0.1
844,072 - +0.2
844,072 - +0.5
844,073 + +0.4
844,073 + -0.2
844,073 + +0.2
844,073 + +0.1
844,074 - -0.1
844,074 - +0.5
844,074 - -0.0
844,075 + -0.4
844,075 + -0.2
844,076 - -0.1
844,076 - +0.3
844,076 - -0.7
844,077 + +0.9
844,077 + +0.2
844,112 + +0.3
844,225 + MMP_RS04440 0.16 +0.2
844,256 - MMP_RS04440 0.20 -0.0
844,256 - MMP_RS04440 0.20 -0.3
844,257 + MMP_RS04440 0.20 -0.3
844,269 - MMP_RS04440 0.22 -0.2
844,269 - MMP_RS04440 0.22 +0.1
844,300 + MMP_RS04440 0.25 +0.2
844,337 - MMP_RS04440 0.30 +0.0
844,337 - MMP_RS04440 0.30 +0.2
844,481 - MMP_RS04440 0.47 +1.0
844,532 + MMP_RS04440 0.53 -0.3
844,655 - MMP_RS04440 0.68 +0.6
844,673 - MMP_RS04440 0.70 -0.1
844,808 + MMP_RS04440 0.87 +0.3
844,880 - +0.4
844,889 - +0.0
844,910 - -0.3
844,911 + +0.0
844,919 - +0.2
844,930 + -0.1
844,930 + +0.1
844,933 - -0.2
844,934 + +0.8
845,009 - MMP_RS04445 0.15 +0.1
845,086 + MMP_RS04445 0.40 +0.0
845,086 + MMP_RS04445 0.40 +0.7
845,105 + MMP_RS04445 0.46 -0.3
845,139 + MMP_RS04445 0.56 -0.0
845,165 - MMP_RS04445 0.64 +0.1
845,191 - MMP_RS04445 0.73 +0.4
845,191 - MMP_RS04445 0.73 +0.5
845,214 - MMP_RS04445 0.80 +0.3
845,245 - MMP_RS04445 0.90 +0.0
845,273 - -0.6
845,276 + -0.2
845,284 - +0.1
845,284 - +0.1
845,287 + +0.2
845,453 - MMP_RS04450 0.45 -0.3
845,476 - MMP_RS04450 0.52 +0.2
845,476 - MMP_RS04450 0.52 -0.3
845,476 - MMP_RS04450 0.52 +0.8
845,476 - MMP_RS04450 0.52 +0.3
845,476 - MMP_RS04450 0.52 +0.3
845,477 + MMP_RS04450 0.52 +0.1
845,501 - MMP_RS04450 0.58 -0.2
845,502 + MMP_RS04450 0.59 -0.7
845,502 + MMP_RS04450 0.59 -0.1
845,502 + MMP_RS04450 0.59 +0.1
845,531 - MMP_RS04450 0.67 +0.4
845,531 - MMP_RS04450 0.67 -0.2
845,545 + MMP_RS04450 0.70 -0.2
845,552 - MMP_RS04450 0.72 -0.5
845,553 + MMP_RS04450 0.73 -0.1
845,557 + MMP_RS04450 0.74 +0.2
845,592 + MMP_RS04450 0.83 -0.1
845,759 - -0.3
845,760 + -0.2
845,807 + +0.1
845,807 + +0.1
845,807 + +0.4
845,830 - -0.1
845,830 - +0.1
845,831 + +0.1
845,886 - MMP_RS04455 0.13 -0.7
845,895 - MMP_RS04455 0.13 +0.2
845,895 - MMP_RS04455 0.13 +0.0
845,896 + MMP_RS04455 0.14 -0.1
845,896 + MMP_RS04455 0.14 +0.4
845,905 + MMP_RS04455 0.14 -0.0
845,907 - MMP_RS04455 0.14 -0.2
845,926 - MMP_RS04455 0.16 -0.2
845,927 + MMP_RS04455 0.16 -0.1
845,992 + MMP_RS04455 0.20 -0.0
846,040 + MMP_RS04455 0.24 -0.1
846,040 + MMP_RS04455 0.24 +0.1
846,131 - MMP_RS04455 0.30 +0.2
846,131 - MMP_RS04455 0.30 +0.2
846,132 + MMP_RS04455 0.30 -0.1
846,148 - MMP_RS04455 0.31 -0.0
846,188 + MMP_RS04455 0.34 -0.2

Or see this region's nucleotide sequence