Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03755 and MMP_RS03760 are separated by 383 nucleotides MMP_RS03760 and MMP_RS03765 are separated by 37 nucleotides MMP_RS03765 and MMP_RS03770 are separated by 252 nucleotides
MMP_RS03755: MMP_RS03755 - MarR family transcriptional regulator, at 710,315 to 710,851
_RS03755
MMP_RS03760: MMP_RS03760 - hypothetical protein, at 711,235 to 711,585
_RS03760
MMP_RS03765: MMP_RS03765 - CopG family ribbon-helix-helix protein, at 711,623 to 712,030
_RS03765
MMP_RS03770: MMP_RS03770 - hydroxylamine reductase, at 712,283 to 713,923
_RS03770
Position (kb) 711
712
713 Strain fitness (log2 ratio) -1
0
1 at 710.636 kb on - strand, within MMP_RS03755 at 710.636 kb on - strand, within MMP_RS03755 at 710.637 kb on + strand, within MMP_RS03755 at 710.637 kb on + strand, within MMP_RS03755 at 710.643 kb on - strand, within MMP_RS03755 at 710.643 kb on - strand, within MMP_RS03755 at 710.643 kb on - strand, within MMP_RS03755 at 710.643 kb on - strand, within MMP_RS03755 at 710.644 kb on + strand, within MMP_RS03755 at 710.644 kb on + strand, within MMP_RS03755 at 710.653 kb on - strand, within MMP_RS03755 at 710.750 kb on + strand, within MMP_RS03755 at 710.767 kb on - strand, within MMP_RS03755 at 710.783 kb on - strand, within MMP_RS03755 at 710.784 kb on + strand, within MMP_RS03755 at 710.818 kb on + strand at 710.831 kb on - strand at 710.832 kb on + strand at 710.832 kb on + strand at 710.832 kb on + strand at 710.875 kb on - strand at 710.875 kb on - strand at 710.942 kb on + strand at 711.055 kb on - strand at 711.055 kb on - strand at 711.082 kb on - strand at 711.086 kb on + strand at 711.088 kb on - strand at 711.092 kb on - strand at 711.092 kb on - strand at 711.092 kb on - strand at 711.094 kb on - strand at 711.202 kb on - strand at 711.202 kb on - strand at 711.205 kb on + strand at 711.255 kb on + strand at 711.342 kb on - strand, within MMP_RS03760 at 711.371 kb on - strand, within MMP_RS03760 at 711.371 kb on - strand, within MMP_RS03760 at 711.371 kb on - strand, within MMP_RS03760 at 711.371 kb on - strand, within MMP_RS03760 at 711.372 kb on + strand, within MMP_RS03760 at 711.372 kb on + strand, within MMP_RS03760 at 711.372 kb on + strand, within MMP_RS03760 at 711.372 kb on + strand, within MMP_RS03760 at 711.372 kb on + strand, within MMP_RS03760 at 711.372 kb on + strand, within MMP_RS03760 at 711.372 kb on + strand, within MMP_RS03760 at 711.373 kb on - strand, within MMP_RS03760 at 711.402 kb on - strand, within MMP_RS03760 at 711.402 kb on - strand, within MMP_RS03760 at 711.408 kb on - strand, within MMP_RS03760 at 711.408 kb on - strand, within MMP_RS03760 at 711.412 kb on - strand, within MMP_RS03760 at 711.427 kb on - strand, within MMP_RS03760 at 711.435 kb on + strand, within MMP_RS03760 at 711.444 kb on - strand, within MMP_RS03760 at 711.444 kb on - strand, within MMP_RS03760 at 711.566 kb on + strand at 711.569 kb on - strand at 711.598 kb on - strand at 711.598 kb on - strand at 711.602 kb on - strand at 711.602 kb on - strand at 711.602 kb on - strand at 711.633 kb on - strand at 711.633 kb on - strand at 711.690 kb on - strand, within MMP_RS03765 at 711.868 kb on - strand, within MMP_RS03765 at 711.870 kb on - strand, within MMP_RS03765 at 711.873 kb on - strand, within MMP_RS03765 at 711.893 kb on - strand, within MMP_RS03765 at 711.893 kb on - strand, within MMP_RS03765 at 711.960 kb on - strand, within MMP_RS03765 at 711.984 kb on - strand, within MMP_RS03765 at 711.993 kb on - strand at 712.021 kb on - strand at 712.044 kb on + strand at 712.155 kb on + strand at 712.380 kb on - strand at 712.413 kb on - strand at 712.431 kb on - strand at 712.432 kb on + strand at 712.721 kb on + strand, within MMP_RS03770 at 712.723 kb on - strand, within MMP_RS03770 at 712.755 kb on + strand, within MMP_RS03770 at 712.860 kb on - strand, within MMP_RS03770 at 712.901 kb on + strand, within MMP_RS03770
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 710,636 - MMP_RS03755 0.60 +0.3 710,636 - MMP_RS03755 0.60 -0.3 710,637 + MMP_RS03755 0.60 -0.6 710,637 + MMP_RS03755 0.60 +0.1 710,643 - MMP_RS03755 0.61 +0.0 710,643 - MMP_RS03755 0.61 -0.2 710,643 - MMP_RS03755 0.61 -0.1 710,643 - MMP_RS03755 0.61 +0.0 710,644 + MMP_RS03755 0.61 +0.4 710,644 + MMP_RS03755 0.61 +0.2 710,653 - MMP_RS03755 0.63 -0.1 710,750 + MMP_RS03755 0.81 +0.1 710,767 - MMP_RS03755 0.84 -0.1 710,783 - MMP_RS03755 0.87 -0.8 710,784 + MMP_RS03755 0.87 +0.1 710,818 + -0.0 710,831 - +0.1 710,832 + +0.4 710,832 + +0.4 710,832 + +0.5 710,875 - -0.7 710,875 - +0.2 710,942 + -0.1 711,055 - -0.1 711,055 - -0.3 711,082 - -0.5 711,086 + -0.7 711,088 - -0.1 711,092 - +0.2 711,092 - +0.0 711,092 - +0.4 711,094 - -0.1 711,202 - -0.0 711,202 - +0.0 711,205 + +0.2 711,255 + +0.2 711,342 - MMP_RS03760 0.30 -0.0 711,371 - MMP_RS03760 0.39 +0.1 711,371 - MMP_RS03760 0.39 +0.5 711,371 - MMP_RS03760 0.39 +0.1 711,371 - MMP_RS03760 0.39 -0.0 711,372 + MMP_RS03760 0.39 +0.1 711,372 + MMP_RS03760 0.39 +0.1 711,372 + MMP_RS03760 0.39 +0.1 711,372 + MMP_RS03760 0.39 +0.4 711,372 + MMP_RS03760 0.39 +0.5 711,372 + MMP_RS03760 0.39 +0.1 711,372 + MMP_RS03760 0.39 +0.1 711,373 - MMP_RS03760 0.39 +0.2 711,402 - MMP_RS03760 0.48 +0.5 711,402 - MMP_RS03760 0.48 +0.3 711,408 - MMP_RS03760 0.49 +0.2 711,408 - MMP_RS03760 0.49 -0.2 711,412 - MMP_RS03760 0.50 -0.2 711,427 - MMP_RS03760 0.55 +0.3 711,435 + MMP_RS03760 0.57 -0.3 711,444 - MMP_RS03760 0.60 +0.3 711,444 - MMP_RS03760 0.60 -0.2 711,566 + -0.0 711,569 - +0.2 711,598 - -0.3 711,598 - -0.0 711,602 - +0.1 711,602 - +0.2 711,602 - -0.8 711,633 - +0.0 711,633 - -0.1 711,690 - MMP_RS03765 0.16 +0.1 711,868 - MMP_RS03765 0.60 +0.0 711,870 - MMP_RS03765 0.61 +0.1 711,873 - MMP_RS03765 0.61 +0.4 711,893 - MMP_RS03765 0.66 +0.1 711,893 - MMP_RS03765 0.66 +0.9 711,960 - MMP_RS03765 0.83 -0.4 711,984 - MMP_RS03765 0.88 +0.1 711,993 - -0.0 712,021 - +0.0 712,044 + -0.1 712,155 + -0.2 712,380 - +0.4 712,413 - +0.2 712,431 - -0.3 712,432 + +0.1 712,721 + MMP_RS03770 0.27 +0.6 712,723 - MMP_RS03770 0.27 -0.1 712,755 + MMP_RS03770 0.29 +0.5 712,860 - MMP_RS03770 0.35 +0.0 712,901 + MMP_RS03770 0.38 +0.0
Or see this region's nucleotide sequence