Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03580 and MMP_RS03585 are separated by 163 nucleotides MMP_RS03585 and MMP_RS03590 are separated by 121 nucleotides
MMP_RS03580: MMP_RS03580 - signal recognition particle-docking protein FtsY, at 671,197 to 672,348
_RS03580
MMP_RS03585: MMP_RS03585 - Hsp20/alpha crystallin family protein, at 672,512 to 672,976
_RS03585
MMP_RS03590: MMP_RS03590 - METTL5 family protein, at 673,098 to 673,739
_RS03590
Position (kb) 672
673 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 671.521 kb on - strand, within MMP_RS03580 at 671.606 kb on - strand, within MMP_RS03580 at 671.754 kb on - strand, within MMP_RS03580 at 671.960 kb on + strand, within MMP_RS03580 at 672.061 kb on + strand, within MMP_RS03580 at 672.382 kb on - strand at 672.392 kb on + strand at 672.412 kb on - strand at 672.416 kb on + strand at 672.422 kb on + strand at 672.425 kb on - strand at 672.425 kb on - strand at 672.434 kb on - strand at 672.507 kb on + strand at 672.507 kb on + strand at 672.666 kb on - strand, within MMP_RS03585 at 672.848 kb on - strand, within MMP_RS03585 at 673.000 kb on - strand at 673.028 kb on + strand at 673.050 kb on - strand at 673.052 kb on - strand at 673.096 kb on - strand at 673.274 kb on - strand, within MMP_RS03590 at 673.275 kb on + strand, within MMP_RS03590 at 673.275 kb on + strand, within MMP_RS03590 at 673.277 kb on + strand, within MMP_RS03590 at 673.580 kb on + strand, within MMP_RS03590 at 673.615 kb on + strand, within MMP_RS03590 at 673.648 kb on - strand, within MMP_RS03590 at 673.793 kb on - strand at 673.796 kb on + strand at 673.799 kb on - strand at 673.799 kb on - strand at 673.897 kb on + strand at 673.976 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 671,521 - MMP_RS03580 0.28 -1.4 671,606 - MMP_RS03580 0.36 -0.7 671,754 - MMP_RS03580 0.48 -1.5 671,960 + MMP_RS03580 0.66 -0.6 672,061 + MMP_RS03580 0.75 -0.4 672,382 - +0.5 672,392 + -0.8 672,412 - +0.1 672,416 + -0.0 672,422 + -0.2 672,425 - +0.0 672,425 - -0.9 672,434 - +0.4 672,507 + +0.5 672,507 + +0.3 672,666 - MMP_RS03585 0.33 -0.1 672,848 - MMP_RS03585 0.72 +0.6 673,000 - +0.1 673,028 + +0.1 673,050 - -0.2 673,052 - +0.2 673,096 - -0.8 673,274 - MMP_RS03590 0.27 +0.1 673,275 + MMP_RS03590 0.28 -0.8 673,275 + MMP_RS03590 0.28 +0.2 673,277 + MMP_RS03590 0.28 -0.6 673,580 + MMP_RS03590 0.75 +0.3 673,615 + MMP_RS03590 0.81 -0.3 673,648 - MMP_RS03590 0.86 -0.0 673,793 - -0.0 673,796 + -0.7 673,799 - -3.1 673,799 - -0.7 673,897 + -0.8 673,976 + -1.9
Or see this region's nucleotide sequence