Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03335 and MMP_RS03340 are separated by 2 nucleotides MMP_RS03340 and MMP_RS03345 are separated by 213 nucleotides
MMP_RS03335: MMP_RS03335 - ABC transporter permease, at 626,477 to 627,670
_RS03335
MMP_RS03340: MMP_RS03340 - ABC transporter ATP-binding protein, at 627,673 to 628,398
_RS03340
MMP_RS03345: MMP_RS03345 - hypothetical protein, at 628,612 to 629,844
_RS03345
Position (kb) 627
628
629 Strain fitness (log2 ratio) -1
0
1 at 626.763 kb on - strand, within MMP_RS03335 at 626.764 kb on + strand, within MMP_RS03335 at 626.796 kb on + strand, within MMP_RS03335 at 627.036 kb on - strand, within MMP_RS03335 at 627.037 kb on + strand, within MMP_RS03335 at 627.055 kb on - strand, within MMP_RS03335 at 627.136 kb on + strand, within MMP_RS03335 at 627.253 kb on - strand, within MMP_RS03335 at 627.354 kb on - strand, within MMP_RS03335 at 627.475 kb on + strand, within MMP_RS03335 at 627.653 kb on + strand at 627.726 kb on - strand at 627.971 kb on - strand, within MMP_RS03340 at 628.394 kb on - strand at 628.441 kb on + strand at 628.506 kb on - strand at 628.544 kb on - strand at 628.551 kb on - strand at 628.559 kb on - strand at 628.559 kb on - strand at 628.561 kb on - strand at 628.579 kb on - strand at 628.745 kb on - strand, within MMP_RS03345 at 628.746 kb on + strand, within MMP_RS03345 at 628.746 kb on + strand, within MMP_RS03345 at 628.795 kb on - strand, within MMP_RS03345 at 628.800 kb on - strand, within MMP_RS03345 at 628.817 kb on - strand, within MMP_RS03345 at 628.999 kb on - strand, within MMP_RS03345 at 629.048 kb on - strand, within MMP_RS03345 at 629.049 kb on + strand, within MMP_RS03345 at 629.053 kb on - strand, within MMP_RS03345 at 629.063 kb on - strand, within MMP_RS03345 at 629.064 kb on + strand, within MMP_RS03345 at 629.065 kb on - strand, within MMP_RS03345 at 629.065 kb on - strand, within MMP_RS03345 at 629.065 kb on - strand, within MMP_RS03345 at 629.141 kb on - strand, within MMP_RS03345 at 629.141 kb on - strand, within MMP_RS03345 at 629.142 kb on + strand, within MMP_RS03345 at 629.143 kb on - strand, within MMP_RS03345 at 629.143 kb on - strand, within MMP_RS03345 at 629.144 kb on + strand, within MMP_RS03345 at 629.144 kb on + strand, within MMP_RS03345 at 629.366 kb on + strand, within MMP_RS03345 at 629.368 kb on + strand, within MMP_RS03345
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 626,763 - MMP_RS03335 0.24 -0.4 626,764 + MMP_RS03335 0.24 -0.3 626,796 + MMP_RS03335 0.27 +0.3 627,036 - MMP_RS03335 0.47 +0.2 627,037 + MMP_RS03335 0.47 -0.4 627,055 - MMP_RS03335 0.48 -0.5 627,136 + MMP_RS03335 0.55 -0.2 627,253 - MMP_RS03335 0.65 +0.3 627,354 - MMP_RS03335 0.73 -0.7 627,475 + MMP_RS03335 0.84 +0.1 627,653 + -0.2 627,726 - +0.4 627,971 - MMP_RS03340 0.41 +0.4 628,394 - +0.3 628,441 + -0.2 628,506 - -0.2 628,544 - +0.3 628,551 - +0.3 628,559 - -0.0 628,559 - +0.0 628,561 - +0.1 628,579 - +0.4 628,745 - MMP_RS03345 0.11 -0.4 628,746 + MMP_RS03345 0.11 +0.3 628,746 + MMP_RS03345 0.11 -0.3 628,795 - MMP_RS03345 0.15 -0.7 628,800 - MMP_RS03345 0.15 +0.1 628,817 - MMP_RS03345 0.17 -0.1 628,999 - MMP_RS03345 0.31 +0.1 629,048 - MMP_RS03345 0.35 +0.1 629,049 + MMP_RS03345 0.35 -0.1 629,053 - MMP_RS03345 0.36 -0.2 629,063 - MMP_RS03345 0.37 -0.7 629,064 + MMP_RS03345 0.37 +0.2 629,065 - MMP_RS03345 0.37 -0.3 629,065 - MMP_RS03345 0.37 +0.2 629,065 - MMP_RS03345 0.37 -0.3 629,141 - MMP_RS03345 0.43 -0.5 629,141 - MMP_RS03345 0.43 -0.1 629,142 + MMP_RS03345 0.43 -0.0 629,143 - MMP_RS03345 0.43 -0.0 629,143 - MMP_RS03345 0.43 +0.3 629,144 + MMP_RS03345 0.43 +0.2 629,144 + MMP_RS03345 0.43 +0.5 629,366 + MMP_RS03345 0.61 -0.2 629,368 + MMP_RS03345 0.61 -0.1
Or see this region's nucleotide sequence