Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03325 and MMP_RS03330 are separated by 131 nucleotides MMP_RS03330 and MMP_RS03335 are separated by 153 nucleotides MMP_RS03335 and MMP_RS03340 are separated by 2 nucleotides MMP_RS03340 and MMP_RS03345 are separated by 213 nucleotides
MMP_RS03325: MMP_RS03325 - hypothetical protein, at 624,435 to 625,601
_RS03325
MMP_RS03330: MMP_RS03330 - rubrerythrin family protein, at 625,733 to 626,323
_RS03330
MMP_RS03335: MMP_RS03335 - ABC transporter permease, at 626,477 to 627,670
_RS03335
MMP_RS03340: MMP_RS03340 - ABC transporter ATP-binding protein, at 627,673 to 628,398
_RS03340
MMP_RS03345: MMP_RS03345 - hypothetical protein, at 628,612 to 629,844
_RS03345
Position (kb) 626
627
628 Strain fitness (log2 ratio) -2
-1
0
1 at 625.496 kb on + strand at 625.574 kb on - strand at 625.645 kb on - strand at 625.668 kb on - strand at 625.669 kb on + strand at 625.669 kb on + strand at 625.689 kb on - strand at 625.697 kb on + strand at 625.795 kb on - strand, within MMP_RS03330 at 625.801 kb on - strand, within MMP_RS03330 at 625.801 kb on - strand, within MMP_RS03330 at 625.802 kb on + strand, within MMP_RS03330 at 625.802 kb on + strand, within MMP_RS03330 at 625.808 kb on + strand, within MMP_RS03330 at 625.808 kb on + strand, within MMP_RS03330 at 625.808 kb on + strand, within MMP_RS03330 at 625.812 kb on - strand, within MMP_RS03330 at 625.812 kb on - strand, within MMP_RS03330 at 625.812 kb on - strand, within MMP_RS03330 at 625.812 kb on - strand, within MMP_RS03330 at 625.812 kb on - strand, within MMP_RS03330 at 625.812 kb on - strand, within MMP_RS03330 at 625.813 kb on + strand, within MMP_RS03330 at 625.813 kb on + strand, within MMP_RS03330 at 625.813 kb on + strand, within MMP_RS03330 at 625.813 kb on + strand, within MMP_RS03330 at 625.815 kb on + strand, within MMP_RS03330 at 625.815 kb on + strand, within MMP_RS03330 at 625.860 kb on - strand, within MMP_RS03330 at 625.909 kb on - strand, within MMP_RS03330 at 625.915 kb on + strand, within MMP_RS03330 at 625.986 kb on + strand, within MMP_RS03330 at 625.993 kb on - strand, within MMP_RS03330 at 625.993 kb on - strand, within MMP_RS03330 at 625.994 kb on + strand, within MMP_RS03330 at 626.088 kb on - strand, within MMP_RS03330 at 626.110 kb on + strand, within MMP_RS03330 at 626.208 kb on - strand, within MMP_RS03330 at 626.209 kb on + strand, within MMP_RS03330 at 626.242 kb on + strand, within MMP_RS03330 at 626.294 kb on - strand at 626.319 kb on + strand at 626.375 kb on + strand at 626.396 kb on + strand at 626.551 kb on + strand at 626.563 kb on - strand at 626.581 kb on + strand at 626.763 kb on - strand, within MMP_RS03335 at 626.764 kb on + strand, within MMP_RS03335 at 626.796 kb on + strand, within MMP_RS03335 at 627.036 kb on - strand, within MMP_RS03335 at 627.037 kb on + strand, within MMP_RS03335 at 627.055 kb on - strand, within MMP_RS03335 at 627.136 kb on + strand, within MMP_RS03335 at 627.253 kb on - strand, within MMP_RS03335 at 627.354 kb on - strand, within MMP_RS03335 at 627.475 kb on + strand, within MMP_RS03335 at 627.653 kb on + strand at 627.726 kb on - strand at 627.971 kb on - strand, within MMP_RS03340 at 628.394 kb on - strand at 628.441 kb on + strand at 628.506 kb on - strand at 628.544 kb on - strand at 628.551 kb on - strand at 628.559 kb on - strand at 628.559 kb on - strand at 628.561 kb on - strand at 628.579 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 625,496 + +0.4 625,574 - +0.4 625,645 - +0.3 625,668 - +0.0 625,669 + +0.0 625,669 + -0.2 625,689 - +0.1 625,697 + +0.4 625,795 - MMP_RS03330 0.10 -0.1 625,801 - MMP_RS03330 0.12 -0.3 625,801 - MMP_RS03330 0.12 -0.3 625,802 + MMP_RS03330 0.12 -0.0 625,802 + MMP_RS03330 0.12 +0.3 625,808 + MMP_RS03330 0.13 +0.1 625,808 + MMP_RS03330 0.13 +0.2 625,808 + MMP_RS03330 0.13 +1.1 625,812 - MMP_RS03330 0.13 +0.1 625,812 - MMP_RS03330 0.13 +0.1 625,812 - MMP_RS03330 0.13 -0.4 625,812 - MMP_RS03330 0.13 -0.5 625,812 - MMP_RS03330 0.13 -0.0 625,812 - MMP_RS03330 0.13 -0.5 625,813 + MMP_RS03330 0.14 -0.2 625,813 + MMP_RS03330 0.14 -0.1 625,813 + MMP_RS03330 0.14 -0.2 625,813 + MMP_RS03330 0.14 -0.1 625,815 + MMP_RS03330 0.14 +0.1 625,815 + MMP_RS03330 0.14 -0.5 625,860 - MMP_RS03330 0.21 -0.1 625,909 - MMP_RS03330 0.30 +0.3 625,915 + MMP_RS03330 0.31 -0.2 625,986 + MMP_RS03330 0.43 -0.1 625,993 - MMP_RS03330 0.44 -0.5 625,993 - MMP_RS03330 0.44 +0.0 625,994 + MMP_RS03330 0.44 -0.0 626,088 - MMP_RS03330 0.60 +0.4 626,110 + MMP_RS03330 0.64 -0.4 626,208 - MMP_RS03330 0.80 +0.2 626,209 + MMP_RS03330 0.81 -0.0 626,242 + MMP_RS03330 0.86 +0.2 626,294 - +0.0 626,319 + -1.8 626,375 + +0.2 626,396 + -0.1 626,551 + +0.5 626,563 - +0.2 626,581 + -0.0 626,763 - MMP_RS03335 0.24 -0.4 626,764 + MMP_RS03335 0.24 -0.3 626,796 + MMP_RS03335 0.27 +0.3 627,036 - MMP_RS03335 0.47 +0.2 627,037 + MMP_RS03335 0.47 -0.4 627,055 - MMP_RS03335 0.48 -0.5 627,136 + MMP_RS03335 0.55 -0.2 627,253 - MMP_RS03335 0.65 +0.3 627,354 - MMP_RS03335 0.73 -0.7 627,475 + MMP_RS03335 0.84 +0.1 627,653 + -0.2 627,726 - +0.4 627,971 - MMP_RS03340 0.41 +0.4 628,394 - +0.3 628,441 + -0.2 628,506 - -0.2 628,544 - +0.3 628,551 - +0.3 628,559 - -0.0 628,559 - +0.0 628,561 - +0.1 628,579 - +0.4
Or see this region's nucleotide sequence