Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS08955 and MMP_RS03225 are separated by 80 nucleotides MMP_RS03225 and MMP_RS03230 are separated by 95 nucleotides MMP_RS03230 and MMP_RS03235 are separated by 213 nucleotides
MMP_RS08955: MMP_RS08955 - hypothetical protein, at 608,051 to 608,197
_RS08955
MMP_RS03225: MMP_RS03225 - acetolactate decarboxylase, at 608,278 to 609,078
_RS03225
MMP_RS03230: MMP_RS03230 - flavodoxin family protein, at 609,174 to 609,749
_RS03230
MMP_RS03235: MMP_RS03235 - tRNA pseudouridine(13) synthase TruD, at 609,963 to 611,255
_RS03235
Position (kb) 609
610 Strain fitness (log2 ratio) -1
0
1 at 608.230 kb on - strand at 608.245 kb on + strand at 608.262 kb on + strand at 608.331 kb on - strand at 608.462 kb on - strand, within MMP_RS03225 at 608.483 kb on - strand, within MMP_RS03225 at 608.536 kb on - strand, within MMP_RS03225 at 608.536 kb on - strand, within MMP_RS03225 at 608.808 kb on + strand, within MMP_RS03225 at 609.119 kb on + strand at 609.138 kb on - strand at 609.181 kb on - strand at 609.182 kb on + strand at 609.230 kb on + strand at 609.237 kb on + strand, within MMP_RS03230 at 609.283 kb on - strand, within MMP_RS03230 at 609.283 kb on - strand, within MMP_RS03230 at 609.284 kb on + strand, within MMP_RS03230 at 609.315 kb on + strand, within MMP_RS03230 at 609.324 kb on - strand, within MMP_RS03230 at 609.541 kb on - strand, within MMP_RS03230 at 609.548 kb on - strand, within MMP_RS03230 at 609.828 kb on - strand at 609.932 kb on + strand at 609.932 kb on + strand at 609.951 kb on - strand at 609.952 kb on + strand at 609.952 kb on + strand at 609.952 kb on + strand at 609.954 kb on + strand at 609.955 kb on - strand at 609.955 kb on - strand at 609.956 kb on + strand at 609.956 kb on + strand at 610.315 kb on - strand, within MMP_RS03235 at 610.316 kb on + strand, within MMP_RS03235 at 610.316 kb on + strand, within MMP_RS03235 at 610.316 kb on + strand, within MMP_RS03235 at 610.388 kb on - strand, within MMP_RS03235 at 610.532 kb on + strand, within MMP_RS03235 at 610.690 kb on + strand, within MMP_RS03235 at 610.690 kb on + strand, within MMP_RS03235
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 608,230 - +0.3 608,245 + -0.2 608,262 + -0.0 608,331 - +0.4 608,462 - MMP_RS03225 0.23 -0.9 608,483 - MMP_RS03225 0.26 +0.3 608,536 - MMP_RS03225 0.32 -0.4 608,536 - MMP_RS03225 0.32 -0.2 608,808 + MMP_RS03225 0.66 -0.0 609,119 + -0.1 609,138 - -1.1 609,181 - -0.3 609,182 + +0.0 609,230 + +0.4 609,237 + MMP_RS03230 0.11 -0.2 609,283 - MMP_RS03230 0.19 +0.5 609,283 - MMP_RS03230 0.19 -0.1 609,284 + MMP_RS03230 0.19 -0.5 609,315 + MMP_RS03230 0.24 -0.3 609,324 - MMP_RS03230 0.26 +0.2 609,541 - MMP_RS03230 0.64 +0.2 609,548 - MMP_RS03230 0.65 -0.3 609,828 - -0.1 609,932 + +0.4 609,932 + -0.4 609,951 - +0.2 609,952 + +0.3 609,952 + -0.1 609,952 + +0.2 609,954 + +0.2 609,955 - -0.8 609,955 - -0.7 609,956 + +0.0 609,956 + +0.2 610,315 - MMP_RS03235 0.27 -0.5 610,316 + MMP_RS03235 0.27 +0.4 610,316 + MMP_RS03235 0.27 +0.7 610,316 + MMP_RS03235 0.27 +0.2 610,388 - MMP_RS03235 0.33 -0.3 610,532 + MMP_RS03235 0.44 +0.7 610,690 + MMP_RS03235 0.56 -1.2 610,690 + MMP_RS03235 0.56 +0.0
Or see this region's nucleotide sequence