Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03140 and MMP_RS03145 are separated by 17 nucleotides MMP_RS03145 and MMP_RS03150 are separated by 156 nucleotides MMP_RS03150 and MMP_RS03155 are separated by 4 nucleotides MMP_RS03155 and MMP_RS03160 are separated by 34 nucleotides
MMP_RS03140: MMP_RS03140 - hypothetical protein, at 591,868 to 593,298
_RS03140
MMP_RS03145: MMP_RS03145 - fibrillarin-like rRNA/tRNA 2'-O-methyltransferase, at 593,316 to 594,008
_RS03145
MMP_RS03150: MMP_RS03150 - phosphoglycerate mutase, at 594,165 to 595,451
_RS03150
MMP_RS03155: MMP_RS03155 - precorrin-6A reductase, at 595,456 to 596,202
_RS03155
MMP_RS03160: MMP_RS03160 - class III signal peptide-containing protein, at 596,237 to 596,920
_RS03160
Position (kb) 594
595
596 Strain fitness (log2 ratio) -1
0
1 at 593.313 kb on - strand at 593.313 kb on - strand at 593.354 kb on + strand at 593.354 kb on + strand at 593.354 kb on + strand at 593.455 kb on - strand, within MMP_RS03145 at 593.455 kb on - strand, within MMP_RS03145 at 593.462 kb on - strand, within MMP_RS03145 at 593.504 kb on - strand, within MMP_RS03145 at 593.507 kb on + strand, within MMP_RS03145 at 593.554 kb on + strand, within MMP_RS03145 at 593.597 kb on - strand, within MMP_RS03145 at 594.006 kb on - strand at 594.007 kb on + strand at 594.016 kb on - strand at 594.016 kb on - strand at 594.017 kb on + strand at 594.023 kb on - strand at 594.059 kb on - strand at 594.068 kb on - strand at 594.069 kb on + strand at 594.069 kb on + strand at 594.071 kb on + strand at 594.091 kb on + strand at 594.103 kb on + strand at 594.121 kb on + strand at 594.135 kb on - strand at 594.144 kb on - strand at 594.148 kb on + strand at 594.327 kb on - strand, within MMP_RS03150 at 594.385 kb on - strand, within MMP_RS03150 at 594.438 kb on - strand, within MMP_RS03150 at 594.466 kb on - strand, within MMP_RS03150 at 594.477 kb on - strand, within MMP_RS03150 at 594.478 kb on + strand, within MMP_RS03150 at 594.494 kb on + strand, within MMP_RS03150 at 594.494 kb on + strand, within MMP_RS03150 at 594.498 kb on + strand, within MMP_RS03150 at 594.498 kb on + strand, within MMP_RS03150 at 594.687 kb on + strand, within MMP_RS03150 at 594.890 kb on - strand, within MMP_RS03150 at 595.243 kb on - strand, within MMP_RS03150 at 595.277 kb on - strand, within MMP_RS03150 at 595.308 kb on + strand, within MMP_RS03150 at 595.324 kb on - strand at 595.325 kb on + strand at 595.340 kb on + strand at 595.375 kb on - strand at 595.378 kb on - strand at 595.379 kb on + strand at 595.381 kb on + strand at 595.435 kb on - strand at 595.435 kb on - strand at 595.435 kb on - strand at 595.436 kb on + strand at 595.444 kb on - strand at 595.445 kb on + strand at 595.517 kb on + strand at 595.533 kb on - strand, within MMP_RS03155 at 595.612 kb on + strand, within MMP_RS03155 at 595.618 kb on - strand, within MMP_RS03155 at 595.619 kb on + strand, within MMP_RS03155 at 595.642 kb on - strand, within MMP_RS03155 at 595.643 kb on + strand, within MMP_RS03155 at 595.643 kb on + strand, within MMP_RS03155 at 595.807 kb on + strand, within MMP_RS03155 at 595.808 kb on - strand, within MMP_RS03155 at 595.808 kb on - strand, within MMP_RS03155 at 595.809 kb on + strand, within MMP_RS03155 at 595.814 kb on + strand, within MMP_RS03155 at 595.840 kb on - strand, within MMP_RS03155 at 595.916 kb on - strand, within MMP_RS03155 at 596.146 kb on + strand at 596.161 kb on + strand at 596.226 kb on + strand at 596.229 kb on - strand at 596.230 kb on + strand at 596.271 kb on + strand at 596.271 kb on + strand at 596.273 kb on + strand at 596.334 kb on + strand, within MMP_RS03160 at 596.360 kb on - strand, within MMP_RS03160
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 593,313 - -0.0 593,313 - -0.7 593,354 + -1.1 593,354 + -0.8 593,354 + -0.5 593,455 - MMP_RS03145 0.20 -0.5 593,455 - MMP_RS03145 0.20 -0.2 593,462 - MMP_RS03145 0.21 +0.0 593,504 - MMP_RS03145 0.27 -0.0 593,507 + MMP_RS03145 0.28 -0.3 593,554 + MMP_RS03145 0.34 +0.7 593,597 - MMP_RS03145 0.41 -0.9 594,006 - +0.3 594,007 + +0.4 594,016 - +0.1 594,016 - +0.3 594,017 + +0.1 594,023 - +0.0 594,059 - +0.1 594,068 - -0.1 594,069 + +0.2 594,069 + +0.1 594,071 + +0.1 594,091 + +0.1 594,103 + -0.1 594,121 + -0.1 594,135 - -0.1 594,144 - -0.1 594,148 + -0.2 594,327 - MMP_RS03150 0.13 -0.0 594,385 - MMP_RS03150 0.17 +0.2 594,438 - MMP_RS03150 0.21 -0.0 594,466 - MMP_RS03150 0.23 +0.3 594,477 - MMP_RS03150 0.24 +0.1 594,478 + MMP_RS03150 0.24 +0.8 594,494 + MMP_RS03150 0.26 +0.0 594,494 + MMP_RS03150 0.26 +0.6 594,498 + MMP_RS03150 0.26 +0.2 594,498 + MMP_RS03150 0.26 +0.1 594,687 + MMP_RS03150 0.41 +0.1 594,890 - MMP_RS03150 0.56 -0.1 595,243 - MMP_RS03150 0.84 +0.2 595,277 - MMP_RS03150 0.86 +0.1 595,308 + MMP_RS03150 0.89 +0.2 595,324 - -0.5 595,325 + +0.3 595,340 + -0.1 595,375 - +0.3 595,378 - -0.1 595,379 + -0.1 595,381 + +0.0 595,435 - -0.2 595,435 - +0.1 595,435 - +0.9 595,436 + +0.0 595,444 - -0.5 595,445 + +0.2 595,517 + -0.4 595,533 - MMP_RS03155 0.10 -1.0 595,612 + MMP_RS03155 0.21 -0.6 595,618 - MMP_RS03155 0.22 -0.1 595,619 + MMP_RS03155 0.22 -0.4 595,642 - MMP_RS03155 0.25 -0.9 595,643 + MMP_RS03155 0.25 -0.6 595,643 + MMP_RS03155 0.25 -1.1 595,807 + MMP_RS03155 0.47 -0.7 595,808 - MMP_RS03155 0.47 -0.1 595,808 - MMP_RS03155 0.47 -0.2 595,809 + MMP_RS03155 0.47 -1.0 595,814 + MMP_RS03155 0.48 -0.7 595,840 - MMP_RS03155 0.51 -1.0 595,916 - MMP_RS03155 0.62 -1.3 596,146 + -0.6 596,161 + -0.4 596,226 + +0.1 596,229 - -0.4 596,230 + -0.6 596,271 + -0.1 596,271 + -0.3 596,273 + -1.2 596,334 + MMP_RS03160 0.14 +0.1 596,360 - MMP_RS03160 0.18 +0.0
Or see this region's nucleotide sequence