Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02865 and MMP_RS02870 are separated by 125 nucleotides MMP_RS02870 and MMP_RS02875 are separated by 33 nucleotides MMP_RS02875 and MMP_RS02880 are separated by 14 nucleotides
MMP_RS02865: MMP_RS02865 - phosphoserine phosphatase SerB, at 545,781 to 546,422
_RS02865
MMP_RS02870: MMP_RS02870 - hypothetical protein, at 546,548 to 547,150
_RS02870
MMP_RS02875: MMP_RS02875 - chorismate pyruvate-lyase family protein, at 547,184 to 547,699
_RS02875
MMP_RS02880: MMP_RS02880 - AmmeMemoRadiSam system radical SAM enzyme, at 547,714 to 548,724
_RS02880
Position (kb) 547
548 Strain fitness (log2 ratio) -2
-1
0
1 at 546.306 kb on + strand at 546.498 kb on + strand at 546.503 kb on + strand at 546.521 kb on + strand at 546.521 kb on + strand at 546.589 kb on - strand at 546.590 kb on + strand at 546.690 kb on - strand, within MMP_RS02870 at 546.690 kb on - strand, within MMP_RS02870 at 546.690 kb on - strand, within MMP_RS02870 at 546.697 kb on + strand, within MMP_RS02870 at 546.784 kb on - strand, within MMP_RS02870 at 546.792 kb on + strand, within MMP_RS02870 at 546.865 kb on - strand, within MMP_RS02870 at 547.066 kb on + strand, within MMP_RS02870 at 547.074 kb on - strand, within MMP_RS02870 at 547.075 kb on + strand, within MMP_RS02870 at 547.095 kb on - strand at 547.107 kb on - strand at 547.123 kb on + strand at 547.123 kb on + strand at 547.161 kb on + strand at 547.173 kb on - strand at 547.183 kb on - strand at 547.192 kb on - strand at 547.236 kb on - strand, within MMP_RS02875 at 547.285 kb on - strand, within MMP_RS02875 at 547.289 kb on + strand, within MMP_RS02875 at 547.299 kb on - strand, within MMP_RS02875 at 547.341 kb on + strand, within MMP_RS02875 at 547.363 kb on + strand, within MMP_RS02875 at 547.367 kb on - strand, within MMP_RS02875 at 547.441 kb on + strand, within MMP_RS02875 at 547.454 kb on + strand, within MMP_RS02875 at 547.583 kb on + strand, within MMP_RS02875 at 547.628 kb on - strand, within MMP_RS02875 at 547.634 kb on + strand, within MMP_RS02875 at 547.634 kb on + strand, within MMP_RS02875 at 547.634 kb on + strand, within MMP_RS02875 at 547.635 kb on - strand, within MMP_RS02875 at 547.665 kb on - strand at 547.679 kb on + strand at 547.856 kb on - strand, within MMP_RS02880 at 547.920 kb on - strand, within MMP_RS02880 at 548.098 kb on - strand, within MMP_RS02880 at 548.099 kb on + strand, within MMP_RS02880 at 548.245 kb on + strand, within MMP_RS02880 at 548.246 kb on - strand, within MMP_RS02880 at 548.471 kb on + strand, within MMP_RS02880 at 548.501 kb on - strand, within MMP_RS02880 at 548.501 kb on - strand, within MMP_RS02880 at 548.501 kb on - strand, within MMP_RS02880 at 548.502 kb on + strand, within MMP_RS02880 at 548.555 kb on - strand, within MMP_RS02880 at 548.556 kb on + strand, within MMP_RS02880 at 548.556 kb on + strand, within MMP_RS02880 at 548.558 kb on + strand, within MMP_RS02880 at 548.596 kb on - strand, within MMP_RS02880 at 548.617 kb on + strand, within MMP_RS02880 at 548.665 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 546,306 + -2.3 546,498 + -0.0 546,503 + +0.4 546,521 + -0.3 546,521 + -0.0 546,589 - -0.2 546,590 + -0.4 546,690 - MMP_RS02870 0.24 -0.6 546,690 - MMP_RS02870 0.24 -0.3 546,690 - MMP_RS02870 0.24 +0.3 546,697 + MMP_RS02870 0.25 -0.2 546,784 - MMP_RS02870 0.39 -0.3 546,792 + MMP_RS02870 0.40 +0.1 546,865 - MMP_RS02870 0.53 -0.1 547,066 + MMP_RS02870 0.86 +0.2 547,074 - MMP_RS02870 0.87 +0.2 547,075 + MMP_RS02870 0.87 +0.0 547,095 - +0.3 547,107 - -0.4 547,123 + -0.0 547,123 + -0.3 547,161 + -1.1 547,173 - -2.4 547,183 - -0.7 547,192 - -0.3 547,236 - MMP_RS02875 0.10 -1.3 547,285 - MMP_RS02875 0.20 -1.2 547,289 + MMP_RS02875 0.20 -1.2 547,299 - MMP_RS02875 0.22 -0.1 547,341 + MMP_RS02875 0.30 -0.9 547,363 + MMP_RS02875 0.35 -1.2 547,367 - MMP_RS02875 0.35 -0.7 547,441 + MMP_RS02875 0.50 -1.5 547,454 + MMP_RS02875 0.52 -0.9 547,583 + MMP_RS02875 0.77 -0.4 547,628 - MMP_RS02875 0.86 -1.3 547,634 + MMP_RS02875 0.87 -0.2 547,634 + MMP_RS02875 0.87 -0.8 547,634 + MMP_RS02875 0.87 -1.6 547,635 - MMP_RS02875 0.87 -1.2 547,665 - -1.1 547,679 + -0.9 547,856 - MMP_RS02880 0.14 -0.2 547,920 - MMP_RS02880 0.20 +0.0 548,098 - MMP_RS02880 0.38 +0.4 548,099 + MMP_RS02880 0.38 +0.5 548,245 + MMP_RS02880 0.53 +0.2 548,246 - MMP_RS02880 0.53 -0.3 548,471 + MMP_RS02880 0.75 +0.1 548,501 - MMP_RS02880 0.78 -0.6 548,501 - MMP_RS02880 0.78 +0.1 548,501 - MMP_RS02880 0.78 +0.3 548,502 + MMP_RS02880 0.78 +0.0 548,555 - MMP_RS02880 0.83 -0.8 548,556 + MMP_RS02880 0.83 -0.1 548,556 + MMP_RS02880 0.83 -0.6 548,558 + MMP_RS02880 0.83 -0.3 548,596 - MMP_RS02880 0.87 +0.4 548,617 + MMP_RS02880 0.89 -0.1 548,665 + -0.4
Or see this region's nucleotide sequence