Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02630 and MMP_RS02635 are separated by 35 nucleotides MMP_RS02635 and MMP_RS02640 are separated by 255 nucleotides MMP_RS02640 and MMP_RS02645 are separated by 131 nucleotides MMP_RS02645 and MMP_RS08945 are separated by 112 nucleotides
MMP_RS02630: MMP_RS02630 - rubredoxin, at 499,642 to 501,126
_RS02630
MMP_RS02635: MMP_RS02635 - class I SAM-dependent methyltransferase, at 501,162 to 501,839
_RS02635
MMP_RS02640: MMP_RS02640 - DUF6198 family protein, at 502,095 to 502,658
_RS02640
MMP_RS02645: MMP_RS02645 - ArsR family transcriptional regulator, at 502,790 to 503,530
_RS02645
MMP_RS08945: MMP_RS08945 - hypothetical protein, at 503,643 to 503,786
_RS08945
Position (kb) 502
503 Strain fitness (log2 ratio) -2
-1
0
1 at 501.272 kb on + strand, within MMP_RS02635 at 501.272 kb on + strand, within MMP_RS02635 at 501.275 kb on - strand, within MMP_RS02635 at 501.504 kb on + strand, within MMP_RS02635 at 501.543 kb on - strand, within MMP_RS02635 at 501.543 kb on - strand, within MMP_RS02635 at 501.544 kb on + strand, within MMP_RS02635 at 501.546 kb on + strand, within MMP_RS02635 at 501.546 kb on + strand, within MMP_RS02635 at 501.600 kb on + strand, within MMP_RS02635 at 501.626 kb on - strand, within MMP_RS02635 at 501.626 kb on - strand, within MMP_RS02635 at 501.630 kb on + strand, within MMP_RS02635 at 501.643 kb on + strand, within MMP_RS02635 at 501.702 kb on - strand, within MMP_RS02635 at 501.785 kb on - strand at 501.787 kb on - strand at 501.792 kb on + strand at 501.792 kb on + strand at 501.793 kb on - strand at 501.834 kb on + strand at 501.862 kb on - strand at 501.874 kb on - strand at 501.875 kb on + strand at 501.876 kb on - strand at 501.876 kb on - strand at 501.908 kb on + strand at 501.988 kb on - strand at 501.989 kb on + strand at 501.991 kb on + strand at 502.011 kb on - strand at 502.016 kb on - strand at 502.035 kb on - strand at 502.035 kb on - strand at 502.036 kb on + strand at 502.036 kb on + strand at 502.036 kb on + strand at 502.036 kb on + strand at 502.039 kb on - strand at 502.039 kb on - strand at 502.039 kb on - strand at 502.055 kb on + strand at 502.114 kb on - strand at 502.162 kb on + strand, within MMP_RS02640 at 502.162 kb on + strand, within MMP_RS02640 at 502.165 kb on - strand, within MMP_RS02640 at 502.166 kb on + strand, within MMP_RS02640 at 502.166 kb on + strand, within MMP_RS02640 at 502.187 kb on - strand, within MMP_RS02640 at 502.187 kb on - strand, within MMP_RS02640 at 502.188 kb on + strand, within MMP_RS02640 at 502.202 kb on + strand, within MMP_RS02640 at 502.220 kb on + strand, within MMP_RS02640 at 502.220 kb on + strand, within MMP_RS02640 at 502.220 kb on + strand, within MMP_RS02640 at 502.220 kb on + strand, within MMP_RS02640 at 502.271 kb on + strand, within MMP_RS02640 at 502.271 kb on + strand, within MMP_RS02640 at 502.272 kb on - strand, within MMP_RS02640 at 502.277 kb on + strand, within MMP_RS02640 at 502.309 kb on - strand, within MMP_RS02640 at 502.309 kb on - strand, within MMP_RS02640 at 502.313 kb on - strand, within MMP_RS02640 at 502.316 kb on + strand, within MMP_RS02640 at 502.332 kb on + strand, within MMP_RS02640 at 502.333 kb on - strand, within MMP_RS02640 at 502.334 kb on + strand, within MMP_RS02640 at 502.347 kb on - strand, within MMP_RS02640 at 502.348 kb on + strand, within MMP_RS02640 at 502.355 kb on - strand, within MMP_RS02640 at 502.359 kb on - strand, within MMP_RS02640 at 502.364 kb on + strand, within MMP_RS02640 at 502.426 kb on - strand, within MMP_RS02640 at 502.550 kb on + strand, within MMP_RS02640 at 502.550 kb on + strand, within MMP_RS02640 at 502.759 kb on - strand at 502.766 kb on - strand at 502.766 kb on - strand at 502.767 kb on + strand at 502.771 kb on - strand at 502.771 kb on - strand at 502.806 kb on - strand at 502.829 kb on - strand at 502.850 kb on + strand at 502.995 kb on + strand, within MMP_RS02645 at 503.067 kb on + strand, within MMP_RS02645 at 503.215 kb on - strand, within MMP_RS02645 at 503.219 kb on - strand, within MMP_RS02645 at 503.252 kb on - strand, within MMP_RS02645 at 503.282 kb on - strand, within MMP_RS02645 at 503.295 kb on - strand, within MMP_RS02645 at 503.332 kb on - strand, within MMP_RS02645 at 503.372 kb on + strand, within MMP_RS02645 at 503.408 kb on - strand, within MMP_RS02645 at 503.409 kb on + strand, within MMP_RS02645 at 503.411 kb on + strand, within MMP_RS02645 at 503.535 kb on + strand at 503.546 kb on + strand at 503.553 kb on - strand at 503.556 kb on + strand at 503.562 kb on - strand at 503.563 kb on + strand at 503.612 kb on - strand at 503.613 kb on + strand at 503.633 kb on + strand at 503.640 kb on + strand at 503.642 kb on - strand at 503.643 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 501,272 + MMP_RS02635 0.16 -0.1 501,272 + MMP_RS02635 0.16 -1.4 501,275 - MMP_RS02635 0.17 -0.2 501,504 + MMP_RS02635 0.50 -0.1 501,543 - MMP_RS02635 0.56 +0.2 501,543 - MMP_RS02635 0.56 +0.1 501,544 + MMP_RS02635 0.56 +0.5 501,546 + MMP_RS02635 0.57 -0.1 501,546 + MMP_RS02635 0.57 +0.2 501,600 + MMP_RS02635 0.65 -0.1 501,626 - MMP_RS02635 0.68 +0.5 501,626 - MMP_RS02635 0.68 -0.0 501,630 + MMP_RS02635 0.69 +0.4 501,643 + MMP_RS02635 0.71 -0.1 501,702 - MMP_RS02635 0.80 +0.3 501,785 - -0.3 501,787 - +0.0 501,792 + -0.1 501,792 + +0.3 501,793 - +0.8 501,834 + +0.6 501,862 - -2.1 501,874 - -0.4 501,875 + +0.0 501,876 - -0.1 501,876 - -0.1 501,908 + -0.2 501,988 - -0.1 501,989 + -0.3 501,991 + +0.5 502,011 - -0.2 502,016 - +0.3 502,035 - +0.2 502,035 - -0.0 502,036 + +0.1 502,036 + +0.1 502,036 + +0.0 502,036 + +0.1 502,039 - +0.3 502,039 - +0.4 502,039 - -0.1 502,055 + -0.3 502,114 - +0.2 502,162 + MMP_RS02640 0.12 +0.6 502,162 + MMP_RS02640 0.12 +0.4 502,165 - MMP_RS02640 0.12 -0.2 502,166 + MMP_RS02640 0.13 +0.5 502,166 + MMP_RS02640 0.13 +0.4 502,187 - MMP_RS02640 0.16 +0.1 502,187 - MMP_RS02640 0.16 +0.0 502,188 + MMP_RS02640 0.16 -0.1 502,202 + MMP_RS02640 0.19 -0.1 502,220 + MMP_RS02640 0.22 -0.2 502,220 + MMP_RS02640 0.22 +0.3 502,220 + MMP_RS02640 0.22 +0.8 502,220 + MMP_RS02640 0.22 -0.4 502,271 + MMP_RS02640 0.31 +0.2 502,271 + MMP_RS02640 0.31 +0.1 502,272 - MMP_RS02640 0.31 +0.1 502,277 + MMP_RS02640 0.32 +0.2 502,309 - MMP_RS02640 0.38 -0.1 502,309 - MMP_RS02640 0.38 +0.3 502,313 - MMP_RS02640 0.39 -0.2 502,316 + MMP_RS02640 0.39 -0.2 502,332 + MMP_RS02640 0.42 -0.2 502,333 - MMP_RS02640 0.42 +0.5 502,334 + MMP_RS02640 0.42 -0.2 502,347 - MMP_RS02640 0.45 +0.1 502,348 + MMP_RS02640 0.45 +0.7 502,355 - MMP_RS02640 0.46 -0.3 502,359 - MMP_RS02640 0.47 +0.3 502,364 + MMP_RS02640 0.48 +0.5 502,426 - MMP_RS02640 0.59 -0.0 502,550 + MMP_RS02640 0.81 -0.1 502,550 + MMP_RS02640 0.81 +1.4 502,759 - -0.4 502,766 - -0.1 502,766 - +0.2 502,767 + +0.1 502,771 - +0.3 502,771 - +0.2 502,806 - -0.0 502,829 - -0.2 502,850 + +0.4 502,995 + MMP_RS02645 0.28 -0.2 503,067 + MMP_RS02645 0.37 +0.8 503,215 - MMP_RS02645 0.57 +0.3 503,219 - MMP_RS02645 0.58 -0.1 503,252 - MMP_RS02645 0.62 +0.1 503,282 - MMP_RS02645 0.66 -0.4 503,295 - MMP_RS02645 0.68 +0.4 503,332 - MMP_RS02645 0.73 -0.2 503,372 + MMP_RS02645 0.79 -0.3 503,408 - MMP_RS02645 0.83 +0.1 503,409 + MMP_RS02645 0.84 -0.3 503,411 + MMP_RS02645 0.84 +0.5 503,535 + +0.4 503,546 + +0.5 503,553 - -0.7 503,556 + -0.1 503,562 - -0.1 503,563 + -0.2 503,612 - -0.1 503,613 + +0.4 503,633 + +0.3 503,640 + -0.1 503,642 - -0.2 503,643 + +0.2
Or see this region's nucleotide sequence