Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02405 and MMP_RS02410 are separated by 115 nucleotides MMP_RS02410 and MMP_RS02415 are separated by 103 nucleotides
MMP_RS02405: MMP_RS02405 - hypothetical protein, at 447,066 to 447,587
_RS02405
MMP_RS02410: MMP_RS02410 - ABC transporter substrate-binding protein, at 447,703 to 448,449
_RS02410
MMP_RS02415: MMP_RS02415 - site-specific integrase, at 448,553 to 449,101
_RS02415
Position (kb) 448
449
450 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 447.601 kb on - strand at 447.601 kb on - strand at 447.642 kb on + strand at 447.738 kb on + strand at 447.837 kb on - strand, within MMP_RS02410 at 448.088 kb on + strand, within MMP_RS02410 at 448.362 kb on - strand, within MMP_RS02410 at 448.392 kb on - strand at 448.483 kb on - strand at 448.483 kb on - strand at 448.483 kb on - strand at 448.947 kb on + strand, within MMP_RS02415 at 448.968 kb on + strand, within MMP_RS02415 at 449.565 kb on - strand at 449.581 kb on + strand at 449.591 kb on - strand at 449.596 kb on + strand at 449.615 kb on - strand at 449.664 kb on - strand at 449.664 kb on - strand at 449.664 kb on - strand at 449.665 kb on + strand at 449.665 kb on + strand at 449.666 kb on - strand at 449.666 kb on - strand at 449.668 kb on - strand at 449.668 kb on - strand at 449.669 kb on + strand at 449.700 kb on + strand at 449.704 kb on + strand at 449.707 kb on - strand at 449.707 kb on - strand at 449.722 kb on - strand at 449.793 kb on + strand at 449.811 kb on + strand at 449.814 kb on - strand at 449.824 kb on - strand at 449.824 kb on - strand at 449.873 kb on - strand at 449.873 kb on - strand at 449.878 kb on + strand at 449.932 kb on + strand at 449.932 kb on + strand at 449.938 kb on - strand at 449.938 kb on - strand at 449.939 kb on + strand at 449.939 kb on + strand at 449.940 kb on - strand at 449.940 kb on - strand at 449.941 kb on + strand at 449.941 kb on + strand at 449.941 kb on + strand at 449.967 kb on - strand at 449.976 kb on + strand at 449.976 kb on + strand at 449.980 kb on - strand at 449.981 kb on + strand at 449.983 kb on - strand at 450.011 kb on + strand at 450.034 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 447,601 - +0.1 447,601 - +0.5 447,642 + -0.6 447,738 + +0.4 447,837 - MMP_RS02410 0.18 -0.3 448,088 + MMP_RS02410 0.52 +0.1 448,362 - MMP_RS02410 0.88 -0.5 448,392 - -0.1 448,483 - -0.1 448,483 - -0.2 448,483 - +0.1 448,947 + MMP_RS02415 0.72 +0.2 448,968 + MMP_RS02415 0.76 -0.3 449,565 - +0.2 449,581 + +0.0 449,591 - -0.2 449,596 + -0.2 449,615 - +0.5 449,664 - +0.4 449,664 - +0.3 449,664 - -0.1 449,665 + +0.3 449,665 + +0.1 449,666 - -0.5 449,666 - +0.1 449,668 - +0.1 449,668 - -0.3 449,669 + -0.6 449,700 + +1.0 449,704 + +0.4 449,707 - +0.0 449,707 - -1.1 449,722 - +0.1 449,793 + -0.2 449,811 + +0.3 449,814 - +0.3 449,824 - +0.3 449,824 - +0.0 449,873 - -0.2 449,873 - -0.5 449,878 + +0.1 449,932 + -0.5 449,932 + -0.1 449,938 - +0.1 449,938 - -0.1 449,939 + -0.1 449,939 + +0.3 449,940 - +0.2 449,940 - -0.3 449,941 + +0.1 449,941 + +0.2 449,941 + +0.0 449,967 - -1.1 449,976 + -1.8 449,976 + -2.1 449,980 - -1.1 449,981 + -2.4 449,983 - -3.7 450,011 + +1.6 450,034 + -2.1
Or see this region's nucleotide sequence