Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02280 and MMP_RS02285 are separated by 54 nucleotides MMP_RS02285 and MMP_RS02290 are separated by 62 nucleotides MMP_RS02290 and MMP_RS02295 are separated by 170 nucleotides MMP_RS02295 and MMP_RS02300 are separated by 18 nucleotides
MMP_RS02280: MMP_RS02280 - DUF211 domain-containing protein, at 430,621 to 430,914
_RS02280
MMP_RS02285: MMP_RS02285 - RNase P subunit p30 family protein, at 430,969 to 431,667
_RS02285
MMP_RS02290: MMP_RS02290 - MBL fold metallo-hydrolase, at 431,730 to 433,031
_RS02290
MMP_RS02295: MMP_RS02295 - TatD family hydrolase, at 433,202 to 433,963
_RS02295
MMP_RS02300: MMP_RS02300 - NAD(P)H-dependent oxidoreductase, at 433,982 to 434,476
_RS02300
Position (kb) 431
432
433
434 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 430.819 kb on + strand, within MMP_RS02280 at 430.906 kb on + strand at 430.906 kb on + strand at 430.906 kb on + strand at 430.909 kb on - strand at 430.938 kb on - strand at 430.941 kb on - strand at 431.138 kb on + strand at 431.391 kb on + strand at 431.409 kb on - strand at 431.500 kb on + strand at 431.504 kb on + strand at 431.755 kb on + strand at 431.832 kb on - strand at 431.947 kb on + strand, within MMP_RS02290 at 432.147 kb on + strand, within MMP_RS02290 at 432.167 kb on - strand, within MMP_RS02290 at 432.190 kb on + strand, within MMP_RS02290 at 432.242 kb on + strand, within MMP_RS02290 at 432.286 kb on - strand, within MMP_RS02290 at 432.318 kb on - strand, within MMP_RS02290 at 432.454 kb on - strand, within MMP_RS02290 at 432.959 kb on - strand at 433.063 kb on - strand at 433.064 kb on + strand at 433.077 kb on - strand at 433.079 kb on - strand at 433.090 kb on + strand at 433.102 kb on + strand at 433.131 kb on - strand at 433.403 kb on + strand, within MMP_RS02295 at 433.635 kb on - strand, within MMP_RS02295 at 433.677 kb on - strand, within MMP_RS02295 at 433.707 kb on - strand, within MMP_RS02295 at 433.800 kb on + strand, within MMP_RS02295 at 433.825 kb on - strand, within MMP_RS02295 at 433.826 kb on + strand, within MMP_RS02295 at 433.831 kb on - strand, within MMP_RS02295 at 433.831 kb on - strand, within MMP_RS02295 at 433.832 kb on + strand, within MMP_RS02295 at 433.852 kb on - strand, within MMP_RS02295 at 433.852 kb on - strand, within MMP_RS02295 at 433.853 kb on + strand, within MMP_RS02295 at 433.854 kb on - strand, within MMP_RS02295 at 433.855 kb on + strand, within MMP_RS02295 at 433.855 kb on + strand, within MMP_RS02295 at 433.855 kb on + strand, within MMP_RS02295 at 433.855 kb on + strand, within MMP_RS02295 at 433.855 kb on + strand, within MMP_RS02295 at 433.930 kb on - strand at 433.933 kb on - strand at 433.933 kb on - strand at 433.947 kb on - strand at 433.961 kb on - strand at 433.979 kb on - strand at 433.981 kb on - strand at 434.007 kb on + strand at 434.007 kb on + strand at 434.009 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 430,819 + MMP_RS02280 0.67 -1.2 430,906 + -0.5 430,906 + -1.9 430,906 + -2.0 430,909 - -2.4 430,938 - -1.0 430,941 - -2.0 431,138 + -1.7 431,391 + -1.8 431,409 - -4.1 431,500 + -0.9 431,504 + -1.9 431,755 + -0.1 431,832 - +0.5 431,947 + MMP_RS02290 0.17 +0.8 432,147 + MMP_RS02290 0.32 -0.1 432,167 - MMP_RS02290 0.34 -0.0 432,190 + MMP_RS02290 0.35 +0.4 432,242 + MMP_RS02290 0.39 -0.3 432,286 - MMP_RS02290 0.43 +0.5 432,318 - MMP_RS02290 0.45 +0.1 432,454 - MMP_RS02290 0.56 +0.6 432,959 - +0.6 433,063 - +0.1 433,064 + -0.3 433,077 - +0.7 433,079 - +0.2 433,090 + -0.4 433,102 + +0.0 433,131 - +0.2 433,403 + MMP_RS02295 0.26 -0.4 433,635 - MMP_RS02295 0.57 +0.1 433,677 - MMP_RS02295 0.62 -0.1 433,707 - MMP_RS02295 0.66 +0.4 433,800 + MMP_RS02295 0.78 +0.2 433,825 - MMP_RS02295 0.82 +0.8 433,826 + MMP_RS02295 0.82 -0.2 433,831 - MMP_RS02295 0.83 +0.2 433,831 - MMP_RS02295 0.83 +0.5 433,832 + MMP_RS02295 0.83 -0.4 433,852 - MMP_RS02295 0.85 -0.0 433,852 - MMP_RS02295 0.85 +0.4 433,853 + MMP_RS02295 0.85 +0.2 433,854 - MMP_RS02295 0.86 +0.3 433,855 + MMP_RS02295 0.86 -0.1 433,855 + MMP_RS02295 0.86 -0.1 433,855 + MMP_RS02295 0.86 +0.4 433,855 + MMP_RS02295 0.86 +0.1 433,855 + MMP_RS02295 0.86 +0.0 433,930 - +0.5 433,933 - -0.0 433,933 - -0.1 433,947 - +0.5 433,961 - +0.1 433,979 - +0.1 433,981 - -0.1 434,007 + +0.5 434,007 + +0.2 434,009 - -0.2
Or see this region's nucleotide sequence