Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02255

Experiment: Formate McCas no stress control 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02250 and MMP_RS02255 are separated by 126 nucleotidesMMP_RS02255 and MMP_RS02260 are separated by 406 nucleotides MMP_RS02250: MMP_RS02250 - FRG domain-containing protein, at 424,800 to 426,188 _RS02250 MMP_RS02255: MMP_RS02255 - hypothetical protein, at 426,315 to 426,530 _RS02255 MMP_RS02260: MMP_RS02260 - lactate utilization protein, at 426,937 to 427,578 _RS02260 Position (kb) 426 427Strain fitness (log2 ratio) -1 0 1at 425.372 kb on + strand, within MMP_RS02250at 425.401 kb on + strand, within MMP_RS02250at 425.472 kb on + strand, within MMP_RS02250at 425.477 kb on + strand, within MMP_RS02250at 425.481 kb on - strand, within MMP_RS02250at 425.525 kb on - strand, within MMP_RS02250at 425.525 kb on - strand, within MMP_RS02250at 425.525 kb on - strand, within MMP_RS02250at 425.530 kb on - strand, within MMP_RS02250at 425.530 kb on - strand, within MMP_RS02250at 425.556 kb on + strand, within MMP_RS02250at 425.779 kb on - strand, within MMP_RS02250at 425.780 kb on + strand, within MMP_RS02250at 425.780 kb on + strand, within MMP_RS02250at 425.841 kb on + strand, within MMP_RS02250at 425.868 kb on - strand, within MMP_RS02250at 425.904 kb on + strand, within MMP_RS02250at 426.002 kb on - strand, within MMP_RS02250at 426.008 kb on - strand, within MMP_RS02250at 426.026 kb on - strand, within MMP_RS02250at 426.026 kb on - strand, within MMP_RS02250at 426.027 kb on + strand, within MMP_RS02250at 426.027 kb on + strand, within MMP_RS02250at 426.062 kb on - strandat 426.063 kb on + strandat 426.186 kb on - strandat 426.221 kb on + strandat 426.385 kb on - strand, within MMP_RS02255at 426.402 kb on + strand, within MMP_RS02255at 426.402 kb on + strand, within MMP_RS02255at 426.456 kb on - strand, within MMP_RS02255at 426.461 kb on - strand, within MMP_RS02255at 426.486 kb on + strand, within MMP_RS02255at 426.506 kb on - strand, within MMP_RS02255at 426.506 kb on - strand, within MMP_RS02255at 426.567 kb on - strandat 426.568 kb on + strandat 426.571 kb on - strandat 426.578 kb on + strandat 426.609 kb on + strandat 426.613 kb on - strandat 426.654 kb on + strandat 426.672 kb on + strandat 426.688 kb on - strandat 426.733 kb on + strandat 426.780 kb on - strandat 426.842 kb on - strandat 426.868 kb on - strandat 426.869 kb on + strandat 426.874 kb on - strandat 426.874 kb on - strandat 426.874 kb on - strandat 426.875 kb on + strandat 426.875 kb on + strandat 426.883 kb on - strandat 426.884 kb on + strandat 427.051 kb on - strand, within MMP_RS02260at 427.051 kb on - strand, within MMP_RS02260at 427.052 kb on + strand, within MMP_RS02260at 427.053 kb on - strand, within MMP_RS02260at 427.063 kb on - strand, within MMP_RS02260at 427.064 kb on + strand, within MMP_RS02260at 427.123 kb on + strand, within MMP_RS02260at 427.204 kb on + strand, within MMP_RS02260at 427.204 kb on + strand, within MMP_RS02260at 427.205 kb on - strand, within MMP_RS02260at 427.205 kb on - strand, within MMP_RS02260at 427.232 kb on - strand, within MMP_RS02260at 427.236 kb on - strand, within MMP_RS02260at 427.277 kb on - strand, within MMP_RS02260at 427.277 kb on - strand, within MMP_RS02260at 427.356 kb on - strand, within MMP_RS02260at 427.469 kb on - strand, within MMP_RS02260at 427.505 kb on + strand, within MMP_RS02260at 427.516 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 1
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425,372 + MMP_RS02250 0.41 -0.1
425,401 + MMP_RS02250 0.43 -0.2
425,472 + MMP_RS02250 0.48 +0.1
425,477 + MMP_RS02250 0.49 +0.0
425,481 - MMP_RS02250 0.49 -0.2
425,525 - MMP_RS02250 0.52 -0.1
425,525 - MMP_RS02250 0.52 +0.3
425,525 - MMP_RS02250 0.52 -0.3
425,530 - MMP_RS02250 0.53 +0.1
425,530 - MMP_RS02250 0.53 -0.5
425,556 + MMP_RS02250 0.54 +0.4
425,779 - MMP_RS02250 0.70 +0.5
425,780 + MMP_RS02250 0.71 +0.1
425,780 + MMP_RS02250 0.71 +0.3
425,841 + MMP_RS02250 0.75 +0.2
425,868 - MMP_RS02250 0.77 +0.2
425,904 + MMP_RS02250 0.79 -0.4
426,002 - MMP_RS02250 0.87 -0.2
426,008 - MMP_RS02250 0.87 -0.2
426,026 - MMP_RS02250 0.88 -0.0
426,026 - MMP_RS02250 0.88 -0.2
426,027 + MMP_RS02250 0.88 +0.2
426,027 + MMP_RS02250 0.88 -0.1
426,062 - -0.1
426,063 + +1.1
426,186 - -0.0
426,221 + +0.3
426,385 - MMP_RS02255 0.32 +0.4
426,402 + MMP_RS02255 0.40 +0.3
426,402 + MMP_RS02255 0.40 +0.2
426,456 - MMP_RS02255 0.65 -0.1
426,461 - MMP_RS02255 0.68 +0.4
426,486 + MMP_RS02255 0.79 -0.1
426,506 - MMP_RS02255 0.88 +0.0
426,506 - MMP_RS02255 0.88 +0.4
426,567 - +0.1
426,568 + -0.2
426,571 - -0.2
426,578 + +0.3
426,609 + +0.3
426,613 - -0.6
426,654 + +0.1
426,672 + +0.2
426,688 - -0.6
426,733 + +0.4
426,780 - +0.7
426,842 - -0.3
426,868 - -0.6
426,869 + -0.0
426,874 - +1.0
426,874 - -0.0
426,874 - -0.0
426,875 + +0.1
426,875 + +0.1
426,883 - +0.4
426,884 + -0.2
427,051 - MMP_RS02260 0.18 +0.2
427,051 - MMP_RS02260 0.18 +0.0
427,052 + MMP_RS02260 0.18 -0.2
427,053 - MMP_RS02260 0.18 -0.1
427,063 - MMP_RS02260 0.20 -0.1
427,064 + MMP_RS02260 0.20 +0.2
427,123 + MMP_RS02260 0.29 +0.7
427,204 + MMP_RS02260 0.42 +0.0
427,204 + MMP_RS02260 0.42 +0.3
427,205 - MMP_RS02260 0.42 -0.4
427,205 - MMP_RS02260 0.42 -0.4
427,232 - MMP_RS02260 0.46 +0.5
427,236 - MMP_RS02260 0.47 +0.3
427,277 - MMP_RS02260 0.53 +0.2
427,277 - MMP_RS02260 0.53 -0.2
427,356 - MMP_RS02260 0.65 -0.3
427,469 - MMP_RS02260 0.83 +0.4
427,505 + MMP_RS02260 0.88 -0.1
427,516 + +0.3

Or see this region's nucleotide sequence