Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02095 and MMP_RS02100 are separated by 200 nucleotides MMP_RS02100 and MMP_RS02105 are separated by 58 nucleotides MMP_RS02105 and MMP_RS02110 are separated by 15 nucleotides
MMP_RS02095: MMP_RS02095 - phosphoribosylamine--glycine ligase, at 389,726 to 391,060
_RS02095
MMP_RS02100: MMP_RS02100 - metallophosphoesterase, at 391,261 to 391,776
_RS02100
MMP_RS02105: MMP_RS02105 - uroporphyrinogen-III synthase, at 391,835 to 392,569
_RS02105
MMP_RS02110: MMP_RS02110 - hypothetical protein, at 392,585 to 392,863
_RS02110
Position (kb) 391
392 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 390.945 kb on - strand at 390.945 kb on - strand at 391.107 kb on - strand at 391.148 kb on + strand at 391.174 kb on - strand at 391.177 kb on + strand at 391.179 kb on - strand at 391.179 kb on - strand at 391.220 kb on - strand at 391.220 kb on - strand at 391.282 kb on - strand at 391.375 kb on - strand, within MMP_RS02100 at 391.529 kb on - strand, within MMP_RS02100 at 391.565 kb on + strand, within MMP_RS02100 at 391.729 kb on - strand at 391.731 kb on - strand at 391.738 kb on - strand at 391.743 kb on + strand at 391.762 kb on - strand at 391.789 kb on - strand at 391.789 kb on - strand at 391.801 kb on - strand at 391.822 kb on + strand at 391.852 kb on - strand at 391.881 kb on - strand at 391.952 kb on - strand at 391.959 kb on - strand at 392.032 kb on - strand at 392.074 kb on - strand at 392.169 kb on + strand at 392.433 kb on - strand at 392.616 kb on - strand, within MMP_RS02110 at 392.616 kb on - strand, within MMP_RS02110
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 390,945 - -0.9 390,945 - -2.7 391,107 - -2.1 391,148 + -1.7 391,174 - -0.9 391,177 + -0.2 391,179 - -0.1 391,179 - +0.2 391,220 - +0.1 391,220 - +1.1 391,282 - -0.1 391,375 - MMP_RS02100 0.22 +0.3 391,529 - MMP_RS02100 0.52 +0.0 391,565 + MMP_RS02100 0.59 +0.2 391,729 - -0.2 391,731 - +0.0 391,738 - -0.2 391,743 + -0.1 391,762 - -0.4 391,789 - -0.0 391,789 - -0.3 391,801 - -0.3 391,822 + +0.0 391,852 - -0.2 391,881 - -4.0 391,952 - -3.1 391,959 - -1.7 392,032 - -3.0 392,074 - -2.3 392,169 + -0.7 392,433 - -2.0 392,616 - MMP_RS02110 0.11 +0.2 392,616 - MMP_RS02110 0.11 +0.4
Or see this region's nucleotide sequence