Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01745 and MMP_RS01750 are separated by 109 nucleotides MMP_RS01750 and MMP_RS01755 are separated by 14 nucleotides MMP_RS01755 and MMP_RS01760 are separated by 14 nucleotides MMP_RS01760 and MMP_RS01765 are separated by 1 nucleotides
MMP_RS01745: MMP_RS01745 - AMP phosphorylase, at 324,525 to 326,042
_RS01745
MMP_RS01750: MMP_RS01750 - DUF63 family protein, at 326,152 to 326,958
_RS01750
MMP_RS01755: MMP_RS01755 - DUF2097 domain-containing protein, at 326,973 to 327,263
_RS01755
MMP_RS01760: MMP_RS01760 - cobalt-precorrin-8 methylmutase, at 327,278 to 327,910
_RS01760
MMP_RS01765: MMP_RS01765 - HIT family protein, at 327,912 to 328,304
_RS01765
Position (kb) 326
327
328 Strain fitness (log2 ratio) -2
-1
0
1 at 326.019 kb on + strand at 326.058 kb on - strand at 326.060 kb on - strand at 326.060 kb on - strand at 326.061 kb on + strand at 326.061 kb on + strand at 326.065 kb on + strand at 326.081 kb on + strand at 326.087 kb on + strand at 326.116 kb on + strand at 326.131 kb on + strand at 326.194 kb on - strand at 326.195 kb on + strand at 326.227 kb on + strand at 326.268 kb on + strand, within MMP_RS01750 at 326.338 kb on + strand, within MMP_RS01750 at 326.445 kb on - strand, within MMP_RS01750 at 326.445 kb on - strand, within MMP_RS01750 at 326.449 kb on - strand, within MMP_RS01750 at 326.450 kb on + strand, within MMP_RS01750 at 326.501 kb on + strand, within MMP_RS01750 at 326.501 kb on + strand, within MMP_RS01750 at 326.505 kb on + strand, within MMP_RS01750 at 326.585 kb on - strand, within MMP_RS01750 at 326.590 kb on - strand, within MMP_RS01750 at 326.590 kb on - strand, within MMP_RS01750 at 326.590 kb on - strand, within MMP_RS01750 at 326.590 kb on - strand, within MMP_RS01750 at 326.590 kb on - strand, within MMP_RS01750 at 326.591 kb on + strand, within MMP_RS01750 at 326.591 kb on + strand, within MMP_RS01750 at 326.591 kb on + strand, within MMP_RS01750 at 326.603 kb on - strand, within MMP_RS01750 at 326.613 kb on + strand, within MMP_RS01750 at 326.617 kb on - strand, within MMP_RS01750 at 326.620 kb on - strand, within MMP_RS01750 at 326.620 kb on - strand, within MMP_RS01750 at 326.621 kb on + strand, within MMP_RS01750 at 326.633 kb on + strand, within MMP_RS01750 at 326.837 kb on - strand, within MMP_RS01750 at 326.881 kb on + strand at 327.036 kb on - strand, within MMP_RS01755 at 327.052 kb on - strand, within MMP_RS01755 at 327.268 kb on - strand at 328.188 kb on - strand, within MMP_RS01765 at 328.189 kb on + strand, within MMP_RS01765 at 328.191 kb on - strand, within MMP_RS01765 at 328.196 kb on - strand, within MMP_RS01765 at 328.197 kb on + strand, within MMP_RS01765 at 328.226 kb on - strand, within MMP_RS01765 at 328.257 kb on - strand, within MMP_RS01765
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 326,019 + +0.0 326,058 - -0.1 326,060 - +0.0 326,060 - +0.3 326,061 + -0.0 326,061 + +0.8 326,065 + +0.0 326,081 + +0.3 326,087 + -0.3 326,116 + +0.9 326,131 + -0.4 326,194 - +0.2 326,195 + +0.1 326,227 + +0.0 326,268 + MMP_RS01750 0.14 -0.3 326,338 + MMP_RS01750 0.23 -0.3 326,445 - MMP_RS01750 0.36 -0.1 326,445 - MMP_RS01750 0.36 -0.1 326,449 - MMP_RS01750 0.37 -1.3 326,450 + MMP_RS01750 0.37 -0.2 326,501 + MMP_RS01750 0.43 -0.1 326,501 + MMP_RS01750 0.43 -0.1 326,505 + MMP_RS01750 0.44 -0.3 326,585 - MMP_RS01750 0.54 -1.1 326,590 - MMP_RS01750 0.54 -0.4 326,590 - MMP_RS01750 0.54 +0.4 326,590 - MMP_RS01750 0.54 -0.3 326,590 - MMP_RS01750 0.54 +0.7 326,590 - MMP_RS01750 0.54 -0.5 326,591 + MMP_RS01750 0.54 -0.2 326,591 + MMP_RS01750 0.54 +0.2 326,591 + MMP_RS01750 0.54 +0.0 326,603 - MMP_RS01750 0.56 -0.4 326,613 + MMP_RS01750 0.57 -0.3 326,617 - MMP_RS01750 0.58 +0.1 326,620 - MMP_RS01750 0.58 -0.9 326,620 - MMP_RS01750 0.58 +0.2 326,621 + MMP_RS01750 0.58 +0.8 326,633 + MMP_RS01750 0.60 +0.4 326,837 - MMP_RS01750 0.85 -0.0 326,881 + -0.3 327,036 - MMP_RS01755 0.22 -2.2 327,052 - MMP_RS01755 0.27 -2.1 327,268 - -1.8 328,188 - MMP_RS01765 0.70 -0.1 328,189 + MMP_RS01765 0.70 -0.3 328,191 - MMP_RS01765 0.71 +0.1 328,196 - MMP_RS01765 0.72 +0.1 328,197 + MMP_RS01765 0.73 -0.2 328,226 - MMP_RS01765 0.80 -0.2 328,257 - MMP_RS01765 0.88 -0.1
Or see this region's nucleotide sequence