Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01535 and MMP_RS01540 are separated by 9 nucleotides MMP_RS01540 and MMP_RS01545 are separated by 5 nucleotides MMP_RS01545 and MMP_RS01550 are separated by 56 nucleotides
MMP_RS01535: MMP_RS01535 - DHH family phosphoesterase, at 286,576 to 288,036
_RS01535
MMP_RS01540: MMP_RS01540 - DUF504 domain-containing protein, at 288,046 to 288,276
_RS01540
MMP_RS01545: MMP_RS01545 - CBS domain-containing protein, at 288,282 to 289,076
_RS01545
MMP_RS01550: MMP_RS01550 - DUF1624 domain-containing protein, at 289,133 to 289,852
_RS01550
Position (kb) 288
289 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 287.494 kb on - strand at 287.494 kb on - strand at 287.768 kb on - strand at 287.779 kb on - strand at 287.781 kb on - strand at 287.782 kb on + strand at 287.813 kb on - strand at 287.841 kb on + strand at 287.841 kb on + strand at 288.044 kb on - strand at 288.104 kb on + strand, within MMP_RS01540 at 288.111 kb on + strand, within MMP_RS01540 at 288.590 kb on - strand, within MMP_RS01545 at 289.001 kb on - strand at 289.082 kb on + strand at 289.167 kb on - strand at 289.178 kb on + strand at 289.206 kb on + strand, within MMP_RS01550
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 287,494 - -1.3 287,494 - -1.9 287,768 - -4.2 287,779 - -3.2 287,781 - -2.6 287,782 + -3.6 287,813 - -2.3 287,841 + -2.2 287,841 + -2.5 288,044 - +0.5 288,104 + MMP_RS01540 0.25 +0.4 288,111 + MMP_RS01540 0.28 +0.6 288,590 - MMP_RS01545 0.39 +0.6 289,001 - -1.0 289,082 + +0.1 289,167 - +0.1 289,178 + -0.2 289,206 + MMP_RS01550 0.10 +0.6
Or see this region's nucleotide sequence