Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01190 and MMP_RS01195 are separated by 2 nucleotides MMP_RS01195 and MMP_RS01200 are separated by 120 nucleotides MMP_RS01200 and MMP_RS01205 are separated by 368 nucleotides
MMP_RS01190: MMP_RS01190 - cadmium-translocating P-type ATPase, at 222,645 to 224,720
_RS01190
MMP_RS01195: MMP_RS01195 - metalloregulator ArsR/SmtB family transcription factor, at 224,723 to 225,067
_RS01195
MMP_RS01200: MMP_RS01200 - hypothetical protein, at 225,188 to 225,925
_RS01200
MMP_RS01205: MMP_RS01205 - manganese-dependent inorganic pyrophosphatase, at 226,294 to 227,217
_RS01205
Position (kb) 225
226 Strain fitness (log2 ratio) -2
-1
0
1 at 224.265 kb on - strand, within MMP_RS01190 at 224.349 kb on + strand, within MMP_RS01190 at 224.367 kb on - strand, within MMP_RS01190 at 224.370 kb on - strand, within MMP_RS01190 at 224.374 kb on - strand, within MMP_RS01190 at 224.485 kb on - strand, within MMP_RS01190 at 224.529 kb on - strand at 224.599 kb on + strand at 224.725 kb on + strand at 224.966 kb on + strand, within MMP_RS01195 at 225.125 kb on + strand at 225.187 kb on - strand at 225.187 kb on - strand at 225.188 kb on + strand at 225.412 kb on + strand, within MMP_RS01200 at 225.412 kb on + strand, within MMP_RS01200 at 225.572 kb on + strand, within MMP_RS01200 at 225.596 kb on + strand, within MMP_RS01200 at 225.693 kb on - strand, within MMP_RS01200 at 225.946 kb on - strand at 226.015 kb on + strand at 226.068 kb on - strand at 226.091 kb on - strand at 226.169 kb on - strand at 226.208 kb on - strand at 226.215 kb on + strand at 226.215 kb on + strand at 226.215 kb on + strand at 226.218 kb on - strand at 226.218 kb on - strand at 226.218 kb on - strand at 226.219 kb on + strand at 226.219 kb on + strand at 226.224 kb on - strand at 226.225 kb on + strand at 226.228 kb on - strand at 226.229 kb on + strand at 226.291 kb on - strand at 226.301 kb on + strand at 226.301 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 224,265 - MMP_RS01190 0.78 -0.1 224,349 + MMP_RS01190 0.82 -0.6 224,367 - MMP_RS01190 0.83 +0.5 224,370 - MMP_RS01190 0.83 +0.4 224,374 - MMP_RS01190 0.83 +0.1 224,485 - MMP_RS01190 0.89 +0.0 224,529 - -0.2 224,599 + -0.7 224,725 + -0.2 224,966 + MMP_RS01195 0.70 -0.3 225,125 + -0.3 225,187 - -0.2 225,187 - +0.0 225,188 + -0.7 225,412 + MMP_RS01200 0.30 +0.3 225,412 + MMP_RS01200 0.30 +0.0 225,572 + MMP_RS01200 0.52 +0.0 225,596 + MMP_RS01200 0.55 +0.4 225,693 - MMP_RS01200 0.68 +0.2 225,946 - -0.5 226,015 + -0.5 226,068 - -0.0 226,091 - -0.4 226,169 - -0.1 226,208 - -0.4 226,215 + +0.7 226,215 + -0.1 226,215 + -0.4 226,218 - -0.2 226,218 - +0.2 226,218 - +0.0 226,219 + -0.1 226,219 + -0.0 226,224 - +0.4 226,225 + -0.3 226,228 - -0.6 226,229 + -0.8 226,291 - -2.2 226,301 + -1.7 226,301 + -1.7
Or see this region's nucleotide sequence