Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01135 and MMP_RS01140 are separated by 9 nucleotides MMP_RS01140 and MMP_RS01145 are separated by 9 nucleotides
MMP_RS01135: MMP_RS01135 - molybdate ABC transporter substrate-binding protein, at 212,528 to 213,331
_RS01135
MMP_RS01140: MMP_RS01140 - molybdate ABC transporter permease subunit, at 213,341 to 214,006
_RS01140
MMP_RS01145: MMP_RS01145 - ABC transporter ATP-binding protein, at 214,016 to 215,158
_RS01145
Position (kb) 213
214
215 Strain fitness (log2 ratio) -2
-1
0
1 at 212.454 kb on - strand at 212.454 kb on - strand at 212.454 kb on - strand at 212.457 kb on + strand at 212.457 kb on + strand at 212.512 kb on + strand at 212.512 kb on + strand at 212.512 kb on + strand at 212.514 kb on + strand at 212.551 kb on + strand at 212.812 kb on - strand, within MMP_RS01135 at 212.823 kb on - strand, within MMP_RS01135 at 212.830 kb on + strand, within MMP_RS01135 at 212.830 kb on + strand, within MMP_RS01135 at 212.830 kb on + strand, within MMP_RS01135 at 212.926 kb on - strand, within MMP_RS01135 at 212.927 kb on + strand, within MMP_RS01135 at 212.927 kb on + strand, within MMP_RS01135 at 212.944 kb on + strand, within MMP_RS01135 at 212.977 kb on - strand, within MMP_RS01135 at 213.129 kb on - strand, within MMP_RS01135 at 213.132 kb on + strand, within MMP_RS01135 at 213.132 kb on + strand, within MMP_RS01135 at 213.132 kb on + strand, within MMP_RS01135 at 213.175 kb on - strand, within MMP_RS01135 at 213.176 kb on + strand, within MMP_RS01135 at 213.176 kb on + strand, within MMP_RS01135 at 213.177 kb on - strand, within MMP_RS01135 at 213.177 kb on - strand, within MMP_RS01135 at 213.178 kb on + strand, within MMP_RS01135 at 213.206 kb on + strand, within MMP_RS01135 at 213.206 kb on + strand, within MMP_RS01135 at 213.217 kb on + strand, within MMP_RS01135 at 213.217 kb on + strand, within MMP_RS01135 at 213.220 kb on - strand, within MMP_RS01135 at 213.220 kb on - strand, within MMP_RS01135 at 213.269 kb on - strand at 213.270 kb on + strand at 213.336 kb on + strand at 213.354 kb on - strand at 213.355 kb on + strand at 213.355 kb on + strand at 213.366 kb on - strand at 213.370 kb on - strand at 213.370 kb on - strand at 213.370 kb on - strand at 213.370 kb on - strand at 213.370 kb on - strand at 213.388 kb on - strand at 213.390 kb on - strand at 213.395 kb on + strand at 213.395 kb on + strand at 213.395 kb on + strand at 213.480 kb on - strand, within MMP_RS01140 at 213.480 kb on - strand, within MMP_RS01140 at 213.597 kb on - strand, within MMP_RS01140 at 213.934 kb on + strand, within MMP_RS01140 at 213.949 kb on + strand at 214.004 kb on - strand at 214.016 kb on + strand at 214.114 kb on + strand at 214.262 kb on + strand, within MMP_RS01145 at 214.305 kb on + strand, within MMP_RS01145 at 214.408 kb on + strand, within MMP_RS01145 at 214.474 kb on + strand, within MMP_RS01145 at 214.782 kb on - strand, within MMP_RS01145 at 214.782 kb on - strand, within MMP_RS01145 at 214.903 kb on + strand, within MMP_RS01145 at 214.911 kb on - strand, within MMP_RS01145 at 214.911 kb on - strand, within MMP_RS01145 at 214.916 kb on + strand, within MMP_RS01145 at 214.917 kb on - strand, within MMP_RS01145 at 214.965 kb on - strand, within MMP_RS01145 at 214.965 kb on - strand, within MMP_RS01145 at 214.966 kb on + strand, within MMP_RS01145
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 212,454 - -2.1 212,454 - +0.5 212,454 - +0.8 212,457 + +0.4 212,457 + +0.3 212,512 + +0.5 212,512 + -0.0 212,512 + -0.1 212,514 + -0.2 212,551 + -0.5 212,812 - MMP_RS01135 0.35 +0.5 212,823 - MMP_RS01135 0.37 +0.5 212,830 + MMP_RS01135 0.38 +0.0 212,830 + MMP_RS01135 0.38 -0.1 212,830 + MMP_RS01135 0.38 +0.1 212,926 - MMP_RS01135 0.50 -0.1 212,927 + MMP_RS01135 0.50 -0.1 212,927 + MMP_RS01135 0.50 +0.0 212,944 + MMP_RS01135 0.52 -0.3 212,977 - MMP_RS01135 0.56 +0.0 213,129 - MMP_RS01135 0.75 -0.2 213,132 + MMP_RS01135 0.75 -0.9 213,132 + MMP_RS01135 0.75 +0.1 213,132 + MMP_RS01135 0.75 +0.7 213,175 - MMP_RS01135 0.80 +0.1 213,176 + MMP_RS01135 0.81 +0.4 213,176 + MMP_RS01135 0.81 -0.0 213,177 - MMP_RS01135 0.81 -0.1 213,177 - MMP_RS01135 0.81 +0.5 213,178 + MMP_RS01135 0.81 +0.2 213,206 + MMP_RS01135 0.84 +0.4 213,206 + MMP_RS01135 0.84 +0.2 213,217 + MMP_RS01135 0.86 +0.1 213,217 + MMP_RS01135 0.86 +0.2 213,220 - MMP_RS01135 0.86 -0.0 213,220 - MMP_RS01135 0.86 -0.2 213,269 - -0.0 213,270 + -0.3 213,336 + +0.0 213,354 - -0.4 213,355 + -0.1 213,355 + +0.1 213,366 - +0.1 213,370 - +0.2 213,370 - +0.4 213,370 - -0.2 213,370 - +0.1 213,370 - -0.1 213,388 - +0.4 213,390 - -0.0 213,395 + +0.0 213,395 + +0.6 213,395 + +0.2 213,480 - MMP_RS01140 0.21 +0.5 213,480 - MMP_RS01140 0.21 +0.1 213,597 - MMP_RS01140 0.38 +0.2 213,934 + MMP_RS01140 0.89 +0.0 213,949 + +0.6 214,004 - +0.1 214,016 + -0.2 214,114 + +0.1 214,262 + MMP_RS01145 0.22 +0.2 214,305 + MMP_RS01145 0.25 +0.0 214,408 + MMP_RS01145 0.34 +0.6 214,474 + MMP_RS01145 0.40 -0.1 214,782 - MMP_RS01145 0.67 +0.1 214,782 - MMP_RS01145 0.67 +0.3 214,903 + MMP_RS01145 0.78 +0.4 214,911 - MMP_RS01145 0.78 -0.0 214,911 - MMP_RS01145 0.78 +0.0 214,916 + MMP_RS01145 0.79 +0.1 214,917 - MMP_RS01145 0.79 +0.1 214,965 - MMP_RS01145 0.83 +0.1 214,965 - MMP_RS01145 0.83 -0.1 214,966 + MMP_RS01145 0.83 +0.1
Or see this region's nucleotide sequence