Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01120 and MMP_RS01125 are separated by 42 nucleotides MMP_RS01125 and MMP_RS01130 are separated by 69 nucleotides MMP_RS01130 and MMP_RS01135 are separated by 526 nucleotides
MMP_RS01120: MMP_RS01120 - permease, at 210,169 to 211,125
_RS01120
MMP_RS01125: MMP_RS01125 - thioredoxin family protein, at 211,168 to 211,401
_RS01125
MMP_RS01130: MMP_RS01130 - flavoprotein, at 211,471 to 212,001
_RS01130
MMP_RS01135: MMP_RS01135 - molybdate ABC transporter substrate-binding protein, at 212,528 to 213,331
_RS01135
Position (kb) 211
212
213 Strain fitness (log2 ratio) -2
-1
0
1
2 at 210.624 kb on - strand, within MMP_RS01120 at 210.664 kb on - strand, within MMP_RS01120 at 210.669 kb on + strand, within MMP_RS01120 at 211.030 kb on + strand at 211.184 kb on - strand at 211.217 kb on + strand, within MMP_RS01125 at 211.253 kb on - strand, within MMP_RS01125 at 211.254 kb on + strand, within MMP_RS01125 at 211.300 kb on - strand, within MMP_RS01125 at 211.300 kb on - strand, within MMP_RS01125 at 211.300 kb on - strand, within MMP_RS01125 at 211.301 kb on + strand, within MMP_RS01125 at 211.301 kb on + strand, within MMP_RS01125 at 211.305 kb on + strand, within MMP_RS01125 at 211.325 kb on - strand, within MMP_RS01125 at 211.416 kb on + strand at 211.429 kb on - strand at 211.429 kb on - strand at 211.455 kb on - strand at 211.455 kb on - strand at 211.456 kb on + strand at 211.456 kb on + strand at 211.457 kb on - strand at 211.457 kb on - strand at 211.458 kb on + strand at 211.458 kb on + strand at 211.458 kb on + strand at 211.458 kb on + strand at 211.496 kb on - strand at 211.497 kb on + strand at 211.500 kb on - strand at 211.678 kb on - strand, within MMP_RS01130 at 211.678 kb on - strand, within MMP_RS01130 at 211.746 kb on - strand, within MMP_RS01130 at 211.747 kb on + strand, within MMP_RS01130 at 211.770 kb on - strand, within MMP_RS01130 at 211.773 kb on + strand, within MMP_RS01130 at 211.806 kb on - strand, within MMP_RS01130 at 211.807 kb on + strand, within MMP_RS01130 at 211.880 kb on - strand, within MMP_RS01130 at 212.008 kb on - strand at 212.008 kb on - strand at 212.009 kb on + strand at 212.012 kb on - strand at 212.013 kb on + strand at 212.017 kb on + strand at 212.018 kb on - strand at 212.129 kb on - strand at 212.129 kb on - strand at 212.129 kb on - strand at 212.177 kb on - strand at 212.281 kb on - strand at 212.286 kb on - strand at 212.454 kb on - strand at 212.454 kb on - strand at 212.454 kb on - strand at 212.457 kb on + strand at 212.457 kb on + strand at 212.512 kb on + strand at 212.512 kb on + strand at 212.512 kb on + strand at 212.514 kb on + strand at 212.551 kb on + strand at 212.812 kb on - strand, within MMP_RS01135 at 212.823 kb on - strand, within MMP_RS01135 at 212.830 kb on + strand, within MMP_RS01135 at 212.830 kb on + strand, within MMP_RS01135 at 212.830 kb on + strand, within MMP_RS01135 at 212.926 kb on - strand, within MMP_RS01135 at 212.927 kb on + strand, within MMP_RS01135 at 212.927 kb on + strand, within MMP_RS01135 at 212.944 kb on + strand, within MMP_RS01135 at 212.977 kb on - strand, within MMP_RS01135
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 210,624 - MMP_RS01120 0.48 +0.5 210,664 - MMP_RS01120 0.52 +1.9 210,669 + MMP_RS01120 0.52 -0.4 211,030 + -0.0 211,184 - +0.4 211,217 + MMP_RS01125 0.21 -0.2 211,253 - MMP_RS01125 0.36 -0.2 211,254 + MMP_RS01125 0.37 +0.2 211,300 - MMP_RS01125 0.56 -0.1 211,300 - MMP_RS01125 0.56 +0.2 211,300 - MMP_RS01125 0.56 +0.2 211,301 + MMP_RS01125 0.57 -0.0 211,301 + MMP_RS01125 0.57 +0.3 211,305 + MMP_RS01125 0.59 -0.1 211,325 - MMP_RS01125 0.67 +0.3 211,416 + +0.7 211,429 - -0.0 211,429 - -0.0 211,455 - -0.6 211,455 - +0.1 211,456 + +0.0 211,456 + +0.4 211,457 - +0.2 211,457 - +0.1 211,458 + -0.2 211,458 + +0.2 211,458 + +0.0 211,458 + +0.3 211,496 - +0.1 211,497 + +0.3 211,500 - -0.3 211,678 - MMP_RS01130 0.39 -0.3 211,678 - MMP_RS01130 0.39 +0.3 211,746 - MMP_RS01130 0.52 -0.1 211,747 + MMP_RS01130 0.52 +0.3 211,770 - MMP_RS01130 0.56 +0.3 211,773 + MMP_RS01130 0.57 +0.1 211,806 - MMP_RS01130 0.63 +0.5 211,807 + MMP_RS01130 0.63 +0.2 211,880 - MMP_RS01130 0.77 +0.6 212,008 - +0.9 212,008 - -0.0 212,009 + -0.7 212,012 - -0.2 212,013 + +0.7 212,017 + -0.1 212,018 - +0.2 212,129 - +0.2 212,129 - -0.1 212,129 - -0.8 212,177 - -0.1 212,281 - -0.2 212,286 - -0.3 212,454 - -2.1 212,454 - +0.5 212,454 - +0.8 212,457 + +0.4 212,457 + +0.3 212,512 + +0.5 212,512 + -0.0 212,512 + -0.1 212,514 + -0.2 212,551 + -0.5 212,812 - MMP_RS01135 0.35 +0.5 212,823 - MMP_RS01135 0.37 +0.5 212,830 + MMP_RS01135 0.38 +0.0 212,830 + MMP_RS01135 0.38 -0.1 212,830 + MMP_RS01135 0.38 +0.1 212,926 - MMP_RS01135 0.50 -0.1 212,927 + MMP_RS01135 0.50 -0.1 212,927 + MMP_RS01135 0.50 +0.0 212,944 + MMP_RS01135 0.52 -0.3 212,977 - MMP_RS01135 0.56 +0.0
Or see this region's nucleotide sequence