Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00890 and MMP_RS00895 are separated by 0 nucleotides MMP_RS00895 and MMP_RS00900 are separated by 16 nucleotides MMP_RS00900 and MMP_RS00905 are separated by 71 nucleotides MMP_RS00905 and MMP_RS00910 are separated by 151 nucleotides MMP_RS00910 and MMP_RS00915 are separated by 18 nucleotides
MMP_RS00890: MMP_RS00890 - DNA-binding protein, at 167,941 to 168,300
_RS00890
MMP_RS00895: MMP_RS00895 - hypothetical protein, at 168,301 to 168,900
_RS00895
MMP_RS00900: MMP_RS00900 - 50S ribosomal protein L39e, at 168,917 to 169,072
_RS00900
MMP_RS00905: MMP_RS00905 - phenylacetate--CoA ligase, at 169,144 to 170,445
_RS00905
MMP_RS00910: MMP_RS00910 - 2-phosphosulfolactate phosphatase, at 170,597 to 171,343
_RS00910
MMP_RS00915: MMP_RS00915 - DUF116 domain-containing protein, at 171,362 to 172,006
_RS00915
Position (kb) 169
170
171 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 168.288 kb on + strand at 168.527 kb on - strand, within MMP_RS00895 at 168.740 kb on - strand, within MMP_RS00895 at 168.740 kb on - strand, within MMP_RS00895 at 168.741 kb on + strand, within MMP_RS00895 at 168.752 kb on + strand, within MMP_RS00895 at 168.758 kb on - strand, within MMP_RS00895 at 168.988 kb on - strand, within MMP_RS00900 at 169.021 kb on - strand, within MMP_RS00900 at 169.560 kb on - strand, within MMP_RS00905 at 169.651 kb on - strand, within MMP_RS00905 at 170.068 kb on + strand, within MMP_RS00905 at 170.263 kb on + strand, within MMP_RS00905 at 170.298 kb on - strand, within MMP_RS00905 at 170.357 kb on - strand at 170.536 kb on - strand at 170.579 kb on - strand at 170.582 kb on + strand at 170.593 kb on - strand at 170.599 kb on + strand at 170.693 kb on - strand, within MMP_RS00910 at 170.774 kb on - strand, within MMP_RS00910 at 170.826 kb on - strand, within MMP_RS00910 at 170.996 kb on + strand, within MMP_RS00910 at 171.029 kb on - strand, within MMP_RS00910 at 171.086 kb on - strand, within MMP_RS00910 at 171.165 kb on + strand, within MMP_RS00910 at 171.194 kb on - strand, within MMP_RS00910 at 171.196 kb on - strand, within MMP_RS00910 at 171.196 kb on - strand, within MMP_RS00910 at 171.196 kb on - strand, within MMP_RS00910 at 171.197 kb on + strand, within MMP_RS00910 at 171.197 kb on + strand, within MMP_RS00910 at 171.198 kb on - strand, within MMP_RS00910 at 171.198 kb on - strand, within MMP_RS00910 at 171.198 kb on - strand, within MMP_RS00910 at 171.199 kb on + strand, within MMP_RS00910 at 171.200 kb on - strand, within MMP_RS00910 at 171.201 kb on + strand, within MMP_RS00910 at 171.221 kb on - strand, within MMP_RS00910 at 171.227 kb on + strand, within MMP_RS00910 at 171.260 kb on - strand, within MMP_RS00910 at 171.280 kb on - strand at 171.417 kb on - strand at 171.417 kb on - strand at 171.444 kb on - strand, within MMP_RS00915 at 171.445 kb on + strand, within MMP_RS00915
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 168,288 + -2.1 168,527 - MMP_RS00895 0.38 -0.7 168,740 - MMP_RS00895 0.73 -2.8 168,740 - MMP_RS00895 0.73 -2.8 168,741 + MMP_RS00895 0.73 -1.7 168,752 + MMP_RS00895 0.75 -1.0 168,758 - MMP_RS00895 0.76 -2.2 168,988 - MMP_RS00900 0.46 -0.6 169,021 - MMP_RS00900 0.67 +0.3 169,560 - MMP_RS00905 0.32 +0.2 169,651 - MMP_RS00905 0.39 +0.4 170,068 + MMP_RS00905 0.71 -0.5 170,263 + MMP_RS00905 0.86 -0.1 170,298 - MMP_RS00905 0.89 +0.1 170,357 - +0.4 170,536 - -0.0 170,579 - -0.1 170,582 + +0.3 170,593 - +0.3 170,599 + +0.1 170,693 - MMP_RS00910 0.13 -0.3 170,774 - MMP_RS00910 0.24 +0.2 170,826 - MMP_RS00910 0.31 -0.0 170,996 + MMP_RS00910 0.53 +0.3 171,029 - MMP_RS00910 0.58 +0.3 171,086 - MMP_RS00910 0.65 +0.9 171,165 + MMP_RS00910 0.76 -0.1 171,194 - MMP_RS00910 0.80 +0.1 171,196 - MMP_RS00910 0.80 -1.0 171,196 - MMP_RS00910 0.80 -0.2 171,196 - MMP_RS00910 0.80 +0.2 171,197 + MMP_RS00910 0.80 +0.4 171,197 + MMP_RS00910 0.80 +0.2 171,198 - MMP_RS00910 0.80 +0.7 171,198 - MMP_RS00910 0.80 +1.0 171,198 - MMP_RS00910 0.80 +0.3 171,199 + MMP_RS00910 0.81 +0.3 171,200 - MMP_RS00910 0.81 +0.3 171,201 + MMP_RS00910 0.81 +1.2 171,221 - MMP_RS00910 0.84 -0.1 171,227 + MMP_RS00910 0.84 -0.2 171,260 - MMP_RS00910 0.89 -0.0 171,280 - +0.3 171,417 - -0.5 171,417 - -0.4 171,444 - MMP_RS00915 0.13 -0.6 171,445 + MMP_RS00915 0.13 -0.3
Or see this region's nucleotide sequence