Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00310 and MMP_RS00315 are separated by 130 nucleotides MMP_RS00315 and MMP_RS00320 overlap by 4 nucleotides MMP_RS00320 and MMP_RS00325 are separated by 13 nucleotides MMP_RS00325 and MMP_RS00330 are separated by 107 nucleotides
MMP_RS00310: MMP_RS00310 - CBS domain-containing protein, at 67,114 to 68,025
_RS00310
MMP_RS00315: MMP_RS00315 - Nif3-like dinuclear metal center hexameric protein, at 68,156 to 68,896
_RS00315
MMP_RS00320: MMP_RS00320 - class I SAM-dependent methyltransferase, at 68,893 to 69,501
_RS00320
MMP_RS00325: MMP_RS00325 - RNA-binding protein, at 69,515 to 69,994
_RS00325
MMP_RS00330: MMP_RS00330 - 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH, at 70,102 to 71,181
_RS00330
Position (kb)
68
69
70 Strain fitness (log2 ratio)
-1
0
1 at 67.996 kb on - strand at 68.011 kb on - strand at 68.011 kb on - strand at 68.017 kb on + strand at 68.017 kb on + strand at 68.026 kb on + strand at 68.049 kb on - strand at 68.060 kb on - strand at 68.074 kb on - strand at 68.074 kb on - strand at 68.074 kb on - strand at 68.074 kb on - strand at 68.075 kb on + strand at 68.076 kb on - strand at 68.076 kb on - strand at 68.076 kb on - strand at 68.076 kb on - strand at 68.077 kb on + strand at 68.079 kb on + strand at 68.099 kb on - strand at 68.103 kb on + strand at 68.109 kb on + strand at 68.198 kb on - strand at 68.202 kb on - strand at 68.271 kb on + strand, within MMP_RS00315 at 68.339 kb on - strand, within MMP_RS00315 at 68.343 kb on - strand, within MMP_RS00315 at 68.343 kb on - strand, within MMP_RS00315 at 68.343 kb on - strand, within MMP_RS00315 at 68.613 kb on - strand, within MMP_RS00315 at 68.711 kb on - strand, within MMP_RS00315 at 68.711 kb on - strand, within MMP_RS00315 at 68.754 kb on + strand, within MMP_RS00315 at 69.287 kb on + strand, within MMP_RS00320 at 69.302 kb on + strand, within MMP_RS00320 at 69.446 kb on - strand at 69.447 kb on + strand at 69.448 kb on - strand at 69.454 kb on + strand at 69.749 kb on - strand, within MMP_RS00325 at 69.750 kb on + strand, within MMP_RS00325 at 70.059 kb on - strand at 70.103 kb on - strand at 70.104 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 67,996 - -0.5 68,011 - -0.0 68,011 - -0.8 68,017 + -0.8 68,017 + -0.7 68,026 + -0.0 68,049 - +0.2 68,060 - -0.4 68,074 - -0.3 68,074 - +0.8 68,074 - +0.3 68,074 - +0.3 68,075 + +0.3 68,076 - +0.3 68,076 - -0.7 68,076 - -0.5 68,076 - -0.3 68,077 + -0.2 68,079 + -0.3 68,099 - -0.1 68,103 + -0.3 68,109 + -0.1 68,198 - +0.4 68,202 - -0.3 68,271 + MMP_RS00315 0.16 -1.3 68,339 - MMP_RS00315 0.25 -1.1 68,343 - MMP_RS00315 0.25 -1.2 68,343 - MMP_RS00315 0.25 -1.3 68,343 - MMP_RS00315 0.25 -0.9 68,613 - MMP_RS00315 0.62 -0.9 68,711 - MMP_RS00315 0.75 -0.1 68,711 - MMP_RS00315 0.75 -0.5 68,754 + MMP_RS00315 0.81 -1.6 69,287 + MMP_RS00320 0.65 -0.7 69,302 + MMP_RS00320 0.67 -1.2 69,446 - +0.1 69,447 + -0.8 69,448 - -0.6 69,454 + -0.4 69,749 - MMP_RS00325 0.49 -0.0 69,750 + MMP_RS00325 0.49 -0.4 70,059 - -0.2 70,103 - -0.5 70,104 + -0.1
Or see this region's nucleotide sequence