Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3376 and Dsui_3377 are separated by 186 nucleotides Dsui_3377 and Dsui_3378 are separated by 253 nucleotides
Dsui_3376: Dsui_3376 - aspartate/tyrosine/aromatic aminotransferase, at 3,618,001 to 3,619,167
_3376
Dsui_3377: Dsui_3377 - Uncharacterized protein conserved in bacteria (DUF2325), at 3,619,354 to 3,620,076
_3377
Dsui_3378: Dsui_3378 - hypothetical protein, at 3,620,330 to 3,621,289
_3378
Position (kb)
3619
3620
3621 Strain fitness (log2 ratio)
-2
-1
0
1 at 3618.358 kb on + strand at 3618.382 kb on + strand at 3618.384 kb on + strand at 3618.509 kb on - strand, within Dsui_3376 at 3618.724 kb on - strand, within Dsui_3376 at 3618.798 kb on - strand, within Dsui_3376 at 3618.798 kb on - strand, within Dsui_3376 at 3618.882 kb on + strand, within Dsui_3376 at 3618.916 kb on + strand, within Dsui_3376 at 3618.944 kb on + strand at 3618.984 kb on + strand, within Dsui_3376 at 3619.034 kb on - strand, within Dsui_3376 at 3619.034 kb on - strand, within Dsui_3376 at 3619.065 kb on + strand at 3619.124 kb on + strand at 3619.126 kb on - strand at 3619.132 kb on - strand at 3619.209 kb on - strand at 3619.278 kb on + strand at 3619.489 kb on - strand, within Dsui_3377 at 3619.532 kb on - strand, within Dsui_3377 at 3619.575 kb on - strand, within Dsui_3377 at 3619.633 kb on - strand, within Dsui_3377 at 3619.704 kb on - strand, within Dsui_3377 at 3619.772 kb on - strand at 3620.082 kb on + strand at 3620.095 kb on - strand at 3620.354 kb on - strand at 3620.384 kb on - strand at 3620.388 kb on + strand at 3620.495 kb on - strand, within Dsui_3378 at 3620.539 kb on - strand at 3620.576 kb on + strand at 3620.584 kb on - strand at 3620.617 kb on - strand at 3620.643 kb on - strand at 3620.758 kb on + strand at 3620.827 kb on + strand, within Dsui_3378 at 3620.849 kb on + strand at 3620.991 kb on + strand at 3620.999 kb on - strand at 3621.042 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 3,618,358 + +0.6 3,618,382 + +0.6 3,618,384 + +0.6 3,618,509 - Dsui_3376 0.44 -0.4 3,618,724 - Dsui_3376 0.62 +0.4 3,618,798 - Dsui_3376 0.68 +0.9 3,618,798 - Dsui_3376 0.68 -0.6 3,618,882 + Dsui_3376 0.75 -1.0 3,618,916 + Dsui_3376 0.78 -0.4 3,618,944 + +0.6 3,618,984 + Dsui_3376 0.84 -1.4 3,619,034 - Dsui_3376 0.89 -0.2 3,619,034 - Dsui_3376 0.89 +1.0 3,619,065 + -2.0 3,619,124 + +0.6 3,619,126 - +0.1 3,619,132 - -0.8 3,619,209 - -1.0 3,619,278 + +0.6 3,619,489 - Dsui_3377 0.19 -1.0 3,619,532 - Dsui_3377 0.25 -2.0 3,619,575 - Dsui_3377 0.31 +0.6 3,619,633 - Dsui_3377 0.39 -1.0 3,619,704 - Dsui_3377 0.48 -2.2 3,619,772 - +0.6 3,620,082 + -1.5 3,620,095 - +0.6 3,620,354 - +0.6 3,620,384 - -0.4 3,620,388 + -0.4 3,620,495 - Dsui_3378 0.17 -0.4 3,620,539 - -0.4 3,620,576 + +0.6 3,620,584 - -0.4 3,620,617 - +0.6 3,620,643 - -0.4 3,620,758 + +0.6 3,620,827 + Dsui_3378 0.52 -0.4 3,620,849 + +0.6 3,620,991 + -1.0 3,620,999 - +0.6 3,621,042 - +0.6
Or see this region's nucleotide sequence