Strain Fitness in Dechlorosoma suillum PS around Dsui_3368

Experiment: ALP with Cisplatin 0.0008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3367 and Dsui_3368 are separated by 175 nucleotidesDsui_3368 and Dsui_3369 are separated by 79 nucleotides Dsui_3367: Dsui_3367 - ABC-type sugar transport system, periplasmic component, at 3,607,849 to 3,609,213 _3367 Dsui_3368: Dsui_3368 - hypothetical protein, at 3,609,389 to 3,610,102 _3368 Dsui_3369: Dsui_3369 - acyl-CoA dehydrogenase, at 3,610,182 to 3,611,366 _3369 Position (kb) 3609 3610 3611Strain fitness (log2 ratio) -2 -1 0 1at 3608.452 kb on - strand, within Dsui_3367at 3608.497 kb on + strandat 3608.500 kb on - strand, within Dsui_3367at 3608.505 kb on - strand, within Dsui_3367at 3608.569 kb on - strand, within Dsui_3367at 3608.684 kb on - strand, within Dsui_3367at 3608.743 kb on - strand, within Dsui_3367at 3608.775 kb on - strand, within Dsui_3367at 3608.978 kb on + strandat 3608.987 kb on + strandat 3609.010 kb on + strandat 3609.018 kb on - strand, within Dsui_3367at 3609.143 kb on + strandat 3609.146 kb on - strandat 3609.171 kb on + strandat 3609.220 kb on + strandat 3609.220 kb on + strandat 3609.220 kb on + strandat 3609.228 kb on - strandat 3609.228 kb on - strandat 3609.228 kb on - strandat 3609.228 kb on - strandat 3609.230 kb on + strandat 3609.417 kb on - strandat 3609.460 kb on - strandat 3609.490 kb on + strand, within Dsui_3368at 3609.700 kb on - strandat 3609.700 kb on - strand, within Dsui_3368at 3609.815 kb on + strand, within Dsui_3368at 3609.825 kb on + strandat 3609.825 kb on + strandat 3609.825 kb on + strand, within Dsui_3368at 3609.825 kb on + strand, within Dsui_3368at 3609.859 kb on + strand, within Dsui_3368at 3609.874 kb on + strand, within Dsui_3368at 3609.874 kb on + strand, within Dsui_3368at 3610.051 kb on - strandat 3610.272 kb on + strandat 3610.354 kb on + strand, within Dsui_3369at 3610.445 kb on + strand, within Dsui_3369at 3610.524 kb on + strand, within Dsui_3369at 3610.527 kb on + strand, within Dsui_3369at 3610.576 kb on + strand, within Dsui_3369at 3610.764 kb on + strand, within Dsui_3369at 3611.001 kb on + strand, within Dsui_3369at 3611.002 kb on + strand, within Dsui_3369at 3611.049 kb on - strand, within Dsui_3369

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml
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3,608,452 - Dsui_3367 0.44 -0.7
3,608,497 + -1.0
3,608,500 - Dsui_3367 0.48 -1.7
3,608,505 - Dsui_3367 0.48 +0.5
3,608,569 - Dsui_3367 0.53 -0.7
3,608,684 - Dsui_3367 0.61 -0.2
3,608,743 - Dsui_3367 0.65 -0.1
3,608,775 - Dsui_3367 0.68 -0.8
3,608,978 + -0.4
3,608,987 + +0.6
3,609,010 + -0.4
3,609,018 - Dsui_3367 0.86 -0.3
3,609,143 + -0.4
3,609,146 - +0.1
3,609,171 + -0.4
3,609,220 + +0.6
3,609,220 + -1.0
3,609,220 + +0.6
3,609,228 - -0.3
3,609,228 - -0.2
3,609,228 - -1.1
3,609,228 - -0.9
3,609,230 + -0.4
3,609,417 - +0.6
3,609,460 - +0.6
3,609,490 + Dsui_3368 0.14 -1.4
3,609,700 - +0.6
3,609,700 - Dsui_3368 0.44 -0.4
3,609,815 + Dsui_3368 0.60 -1.0
3,609,825 + -1.0
3,609,825 + +0.6
3,609,825 + Dsui_3368 0.61 +0.6
3,609,825 + Dsui_3368 0.61 -0.4
3,609,859 + Dsui_3368 0.66 -2.2
3,609,874 + Dsui_3368 0.68 -1.0
3,609,874 + Dsui_3368 0.68 +0.6
3,610,051 - -1.4
3,610,272 + -0.2
3,610,354 + Dsui_3369 0.15 -0.4
3,610,445 + Dsui_3369 0.22 -0.8
3,610,524 + Dsui_3369 0.29 -1.1
3,610,527 + Dsui_3369 0.29 -0.2
3,610,576 + Dsui_3369 0.33 -0.2
3,610,764 + Dsui_3369 0.49 -0.6
3,611,001 + Dsui_3369 0.69 +0.2
3,611,002 + Dsui_3369 0.69 -0.0
3,611,049 - Dsui_3369 0.73 -0.4

Or see this region's nucleotide sequence