Strain Fitness in Dechlorosoma suillum PS around Dsui_3366

Experiment: ALP with Cisplatin 0.0008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3364 and Dsui_3365 are separated by 251 nucleotidesDsui_3365 and Dsui_3366 are separated by 120 nucleotidesDsui_3366 and Dsui_3367 are separated by 8 nucleotides Dsui_3364: Dsui_3364 - alanine--tRNA ligase, at 3,603,585 to 3,606,278 _3364 Dsui_3365: Dsui_3365 - hypothetical protein, at 3,606,530 to 3,606,913 _3365 Dsui_3366: Dsui_3366 - glycerophosphoryl diester phosphodiesterase, at 3,607,034 to 3,607,840 _3366 Dsui_3367: Dsui_3367 - ABC-type sugar transport system, periplasmic component, at 3,607,849 to 3,609,213 _3367 Position (kb) 3607 3608Strain fitness (log2 ratio) -2 -1 0 1at 3606.362 kb on - strandat 3606.402 kb on + strandat 3606.656 kb on + strandat 3606.702 kb on + strandat 3606.736 kb on - strandat 3606.737 kb on - strand, within Dsui_3365at 3606.810 kb on - strandat 3606.837 kb on - strandat 3606.866 kb on - strand, within Dsui_3365at 3606.866 kb on - strandat 3606.966 kb on - strandat 3607.017 kb on - strandat 3607.141 kb on - strand, within Dsui_3366at 3607.141 kb on - strand, within Dsui_3366at 3607.187 kb on - strand, within Dsui_3366at 3607.286 kb on + strandat 3607.458 kb on - strand, within Dsui_3366at 3607.462 kb on + strandat 3607.488 kb on - strand, within Dsui_3366at 3607.531 kb on + strandat 3607.554 kb on - strand, within Dsui_3366at 3607.609 kb on + strandat 3607.855 kb on - strandat 3607.944 kb on - strandat 3607.949 kb on - strandat 3607.967 kb on + strandat 3607.972 kb on + strandat 3608.097 kb on + strandat 3608.236 kb on - strand, within Dsui_3367at 3608.275 kb on - strand, within Dsui_3367at 3608.452 kb on - strand, within Dsui_3367at 3608.497 kb on + strandat 3608.500 kb on - strand, within Dsui_3367at 3608.505 kb on - strand, within Dsui_3367at 3608.569 kb on - strand, within Dsui_3367at 3608.684 kb on - strand, within Dsui_3367at 3608.743 kb on - strand, within Dsui_3367at 3608.775 kb on - strand, within Dsui_3367

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml
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3,606,362 - -1.0
3,606,402 + -2.0
3,606,656 + +0.6
3,606,702 + +0.6
3,606,736 - +0.6
3,606,737 - Dsui_3365 0.54 -2.2
3,606,810 - +0.6
3,606,837 - +0.6
3,606,866 - Dsui_3365 0.88 -0.4
3,606,866 - -0.4
3,606,966 - +0.6
3,607,017 - -0.4
3,607,141 - Dsui_3366 0.13 -1.0
3,607,141 - Dsui_3366 0.13 -0.4
3,607,187 - Dsui_3366 0.19 +0.6
3,607,286 + +0.6
3,607,458 - Dsui_3366 0.53 -1.7
3,607,462 + +0.6
3,607,488 - Dsui_3366 0.56 -1.4
3,607,531 + +0.6
3,607,554 - Dsui_3366 0.64 -1.7
3,607,609 + -1.0
3,607,855 - -0.5
3,607,944 - +0.8
3,607,949 - -0.7
3,607,967 + +0.6
3,607,972 + -0.4
3,608,097 + -0.4
3,608,236 - Dsui_3367 0.28 -1.0
3,608,275 - Dsui_3367 0.31 -0.3
3,608,452 - Dsui_3367 0.44 -0.7
3,608,497 + -1.0
3,608,500 - Dsui_3367 0.48 -1.7
3,608,505 - Dsui_3367 0.48 +0.5
3,608,569 - Dsui_3367 0.53 -0.7
3,608,684 - Dsui_3367 0.61 -0.2
3,608,743 - Dsui_3367 0.65 -0.1
3,608,775 - Dsui_3367 0.68 -0.8

Or see this region's nucleotide sequence