Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3331 and Dsui_3332 are separated by 205 nucleotides Dsui_3332 and Dsui_3333 are separated by 165 nucleotides Dsui_3333 and Dsui_3334 overlap by 4 nucleotides
Dsui_3331: Dsui_3331 - adenylosuccinate lyase, at 3,569,680 to 3,571,047
_3331
Dsui_3332: Dsui_3332 - glutathione S-transferase, at 3,571,253 to 3,571,861
_3332
Dsui_3333: Dsui_3333 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 3,572,027 to 3,573,034
_3333
Dsui_3334: Dsui_3334 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,573,031 to 3,575,670
_3334
Position (kb)
3572
3573
3574 Strain fitness (log2 ratio)
-2
-1
0
1 at 3571.111 kb on - strand at 3571.130 kb on + strand at 3571.166 kb on + strand at 3571.181 kb on + strand at 3571.181 kb on + strand at 3571.189 kb on - strand at 3571.218 kb on - strand at 3571.286 kb on - strand at 3571.293 kb on + strand at 3571.293 kb on + strand at 3571.293 kb on + strand at 3571.301 kb on - strand at 3571.321 kb on + strand, within Dsui_3332 at 3571.366 kb on - strand, within Dsui_3332 at 3571.467 kb on + strand, within Dsui_3332 at 3571.530 kb on + strand, within Dsui_3332 at 3571.650 kb on + strand, within Dsui_3332 at 3571.690 kb on + strand, within Dsui_3332 at 3571.699 kb on - strand, within Dsui_3332 at 3571.732 kb on - strand at 3571.754 kb on - strand, within Dsui_3332 at 3571.832 kb on + strand at 3571.871 kb on - strand at 3571.923 kb on - strand at 3571.941 kb on - strand at 3571.946 kb on - strand at 3571.951 kb on + strand at 3571.970 kb on + strand at 3571.979 kb on - strand at 3571.989 kb on - strand at 3571.997 kb on + strand at 3571.997 kb on + strand at 3572.061 kb on + strand at 3572.097 kb on - strand at 3572.105 kb on - strand at 3572.118 kb on - strand at 3572.138 kb on + strand, within Dsui_3333 at 3572.138 kb on + strand, within Dsui_3333 at 3572.173 kb on + strand, within Dsui_3333 at 3572.244 kb on + strand, within Dsui_3333 at 3572.262 kb on - strand, within Dsui_3333 at 3572.286 kb on + strand, within Dsui_3333 at 3572.294 kb on - strand, within Dsui_3333 at 3572.315 kb on + strand, within Dsui_3333 at 3572.724 kb on - strand, within Dsui_3333 at 3572.851 kb on + strand, within Dsui_3333 at 3572.896 kb on + strand, within Dsui_3333 at 3573.029 kb on + strand at 3573.067 kb on + strand at 3573.115 kb on - strand at 3573.338 kb on + strand, within Dsui_3334 at 3573.458 kb on - strand at 3573.652 kb on + strand, within Dsui_3334 at 3573.660 kb on + strand, within Dsui_3334 at 3573.668 kb on - strand, within Dsui_3334 at 3573.676 kb on - strand at 3573.729 kb on - strand, within Dsui_3334 at 3573.762 kb on + strand, within Dsui_3334 at 3573.774 kb on - strand at 3573.829 kb on + strand, within Dsui_3334 at 3573.926 kb on + strand, within Dsui_3334 at 3573.934 kb on - strand, within Dsui_3334 at 3573.975 kb on + strand, within Dsui_3334 at 3574.031 kb on - strand, within Dsui_3334
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 3,571,111 - +0.6 3,571,130 + +0.6 3,571,166 + -0.4 3,571,181 + +0.6 3,571,181 + +0.6 3,571,189 - +0.6 3,571,218 - +0.6 3,571,286 - +0.6 3,571,293 + -0.4 3,571,293 + -0.8 3,571,293 + +0.5 3,571,301 - +0.6 3,571,321 + Dsui_3332 0.11 -0.4 3,571,366 - Dsui_3332 0.19 -0.4 3,571,467 + Dsui_3332 0.35 +0.0 3,571,530 + Dsui_3332 0.45 +0.2 3,571,650 + Dsui_3332 0.65 -0.1 3,571,690 + Dsui_3332 0.72 -0.5 3,571,699 - Dsui_3332 0.73 -0.4 3,571,732 - +0.6 3,571,754 - Dsui_3332 0.82 -1.4 3,571,832 + -0.6 3,571,871 - -1.0 3,571,923 - -0.4 3,571,941 - +0.6 3,571,946 - -0.4 3,571,951 + -0.4 3,571,970 + -0.4 3,571,979 - -0.4 3,571,989 - +0.6 3,571,997 + +0.3 3,571,997 + -0.7 3,572,061 + +0.7 3,572,097 - -2.0 3,572,105 - -0.4 3,572,118 - -0.4 3,572,138 + Dsui_3333 0.11 -1.0 3,572,138 + Dsui_3333 0.11 -1.1 3,572,173 + Dsui_3333 0.14 -2.0 3,572,244 + Dsui_3333 0.22 -0.7 3,572,262 - Dsui_3333 0.23 -0.4 3,572,286 + Dsui_3333 0.26 -1.0 3,572,294 - Dsui_3333 0.26 +0.6 3,572,315 + Dsui_3333 0.29 -0.4 3,572,724 - Dsui_3333 0.69 +0.6 3,572,851 + Dsui_3333 0.82 -2.7 3,572,896 + Dsui_3333 0.86 +0.6 3,573,029 + -0.4 3,573,067 + -1.7 3,573,115 - -0.4 3,573,338 + Dsui_3334 0.12 -1.4 3,573,458 - -0.4 3,573,652 + Dsui_3334 0.24 -1.4 3,573,660 + Dsui_3334 0.24 +0.6 3,573,668 - Dsui_3334 0.24 -1.7 3,573,676 - +0.6 3,573,729 - Dsui_3334 0.26 -1.0 3,573,762 + Dsui_3334 0.28 +0.6 3,573,774 - +0.6 3,573,829 + Dsui_3334 0.30 -0.4 3,573,926 + Dsui_3334 0.34 -1.0 3,573,934 - Dsui_3334 0.34 +0.6 3,573,975 + Dsui_3334 0.36 +0.6 3,574,031 - Dsui_3334 0.38 +0.6
Or see this region's nucleotide sequence