Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3328 and Dsui_3329 are separated by 242 nucleotides Dsui_3329 and Dsui_3330 are separated by 36 nucleotides Dsui_3330 and Dsui_3331 are separated by 4 nucleotides
Dsui_3328: Dsui_3328 - cytochrome c556, at 3,568,351 to 3,568,821
_3328
Dsui_3329: Dsui_3329 - hypothetical protein, at 3,569,064 to 3,569,381
_3329
Dsui_3330: Dsui_3330 - hypothetical protein, at 3,569,418 to 3,569,675
_3330
Dsui_3331: Dsui_3331 - adenylosuccinate lyase, at 3,569,680 to 3,571,047
_3331
Position (kb)
3569
3570 Strain fitness (log2 ratio)
-2
-1
0
1 at 3568.424 kb on + strand, within Dsui_3328 at 3568.526 kb on + strand, within Dsui_3328 at 3568.568 kb on - strand, within Dsui_3328 at 3568.568 kb on - strand, within Dsui_3328 at 3568.590 kb on + strand, within Dsui_3328 at 3568.653 kb on - strand, within Dsui_3328 at 3568.663 kb on - strand, within Dsui_3328 at 3568.686 kb on + strand, within Dsui_3328 at 3568.748 kb on - strand, within Dsui_3328 at 3568.780 kb on - strand at 3568.804 kb on - strand at 3568.804 kb on - strand at 3568.810 kb on - strand at 3568.861 kb on + strand at 3568.905 kb on + strand at 3569.079 kb on - strand at 3569.095 kb on + strand at 3569.174 kb on + strand, within Dsui_3329 at 3569.230 kb on + strand, within Dsui_3329 at 3569.252 kb on - strand, within Dsui_3329 at 3569.321 kb on + strand, within Dsui_3329 at 3569.321 kb on + strand, within Dsui_3329 at 3569.321 kb on + strand, within Dsui_3329 at 3569.321 kb on + strand, within Dsui_3329 at 3569.329 kb on - strand, within Dsui_3329 at 3569.329 kb on - strand, within Dsui_3329 at 3569.336 kb on + strand, within Dsui_3329 at 3569.344 kb on - strand, within Dsui_3329 at 3569.389 kb on + strand at 3569.442 kb on - strand at 3569.458 kb on + strand, within Dsui_3330 at 3569.581 kb on + strand, within Dsui_3330 at 3569.593 kb on + strand, within Dsui_3330 at 3569.673 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 3,568,424 + Dsui_3328 0.15 +1.6 3,568,526 + Dsui_3328 0.37 -1.7 3,568,568 - Dsui_3328 0.46 -0.4 3,568,568 - Dsui_3328 0.46 +0.1 3,568,590 + Dsui_3328 0.51 -0.4 3,568,653 - Dsui_3328 0.64 +0.1 3,568,663 - Dsui_3328 0.66 -0.1 3,568,686 + Dsui_3328 0.71 +0.6 3,568,748 - Dsui_3328 0.84 -0.5 3,568,780 - +0.3 3,568,804 - -0.2 3,568,804 - +0.2 3,568,810 - -0.6 3,568,861 + -2.7 3,568,905 + -1.7 3,569,079 - +0.6 3,569,095 + +0.6 3,569,174 + Dsui_3329 0.35 -0.4 3,569,230 + Dsui_3329 0.52 -2.4 3,569,252 - Dsui_3329 0.59 -0.3 3,569,321 + Dsui_3329 0.81 -0.4 3,569,321 + Dsui_3329 0.81 -2.2 3,569,321 + Dsui_3329 0.81 +0.6 3,569,321 + Dsui_3329 0.81 -0.4 3,569,329 - Dsui_3329 0.83 -0.4 3,569,329 - Dsui_3329 0.83 +0.4 3,569,336 + Dsui_3329 0.86 -1.4 3,569,344 - Dsui_3329 0.88 -0.4 3,569,389 + -1.0 3,569,442 - +0.4 3,569,458 + Dsui_3330 0.16 +0.6 3,569,581 + Dsui_3330 0.63 -1.0 3,569,593 + Dsui_3330 0.68 -2.0 3,569,673 - +0.0
Or see this region's nucleotide sequence