Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3315 and Dsui_3316 are separated by 18 nucleotides Dsui_3316 and Dsui_3317 are separated by 105 nucleotides Dsui_3317 and Dsui_3318 are separated by 88 nucleotides
Dsui_3315: Dsui_3315 - biopolymer transport protein, at 3,555,778 to 3,556,497
_3315
Dsui_3316: Dsui_3316 - Gram-negative bacterial tonB protein, at 3,556,516 to 3,557,289
_3316
Dsui_3317: Dsui_3317 - cytochrome c551/c552, at 3,557,395 to 3,557,733
_3317
Dsui_3318: Dsui_3318 - cytochrome c, mono- and diheme variants family, at 3,557,822 to 3,559,462
_3318
Position (kb)
3557
3558 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3556.449 kb on + strand at 3556.511 kb on - strand at 3556.513 kb on + strand at 3556.587 kb on - strand at 3556.632 kb on + strand at 3556.673 kb on + strand at 3556.762 kb on - strand, within Dsui_3316 at 3556.798 kb on - strand, within Dsui_3316 at 3556.802 kb on - strand, within Dsui_3316 at 3556.845 kb on - strand, within Dsui_3316 at 3556.964 kb on + strand, within Dsui_3316 at 3556.972 kb on - strand, within Dsui_3316 at 3557.093 kb on + strand at 3557.116 kb on - strand, within Dsui_3316 at 3557.177 kb on - strand, within Dsui_3316 at 3557.187 kb on - strand, within Dsui_3316 at 3557.239 kb on + strand at 3557.294 kb on + strand at 3557.506 kb on - strand at 3557.506 kb on - strand, within Dsui_3317 at 3557.705 kb on - strand at 3557.705 kb on - strand at 3557.707 kb on + strand at 3557.715 kb on - strand at 3557.833 kb on - strand at 3557.837 kb on - strand at 3558.028 kb on - strand, within Dsui_3318 at 3558.028 kb on - strand, within Dsui_3318 at 3558.035 kb on - strand, within Dsui_3318 at 3558.070 kb on + strand, within Dsui_3318 at 3558.070 kb on + strand at 3558.075 kb on + strand, within Dsui_3318 at 3558.078 kb on - strand, within Dsui_3318 at 3558.082 kb on - strand, within Dsui_3318 at 3558.095 kb on - strand, within Dsui_3318 at 3558.113 kb on - strand, within Dsui_3318 at 3558.189 kb on + strand at 3558.304 kb on + strand, within Dsui_3318 at 3558.312 kb on - strand, within Dsui_3318 at 3558.371 kb on - strand, within Dsui_3318 at 3558.448 kb on - strand, within Dsui_3318 at 3558.466 kb on + strand at 3558.563 kb on - strand, within Dsui_3318 at 3558.573 kb on - strand, within Dsui_3318 at 3558.605 kb on - strand, within Dsui_3318 at 3558.683 kb on - strand at 3558.689 kb on - strand, within Dsui_3318 at 3558.707 kb on + strand, within Dsui_3318 at 3558.727 kb on - strand, within Dsui_3318
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 3,556,449 + +0.7 3,556,511 - +0.0 3,556,513 + -2.3 3,556,587 - -0.3 3,556,632 + -0.9 3,556,673 + -0.9 3,556,762 - Dsui_3316 0.32 -0.5 3,556,798 - Dsui_3316 0.36 -0.6 3,556,802 - Dsui_3316 0.37 -0.8 3,556,845 - Dsui_3316 0.43 -0.2 3,556,964 + Dsui_3316 0.58 -0.3 3,556,972 - Dsui_3316 0.59 -0.3 3,557,093 + +0.7 3,557,116 - Dsui_3316 0.78 -0.5 3,557,177 - Dsui_3316 0.85 -0.4 3,557,187 - Dsui_3316 0.87 -0.8 3,557,239 + -0.9 3,557,294 + -1.3 3,557,506 - +0.7 3,557,506 - Dsui_3317 0.33 -0.9 3,557,705 - -1.9 3,557,705 - +0.7 3,557,707 + -1.3 3,557,715 - -0.3 3,557,833 - -0.9 3,557,837 - -4.1 3,558,028 - Dsui_3318 0.13 -2.1 3,558,028 - Dsui_3318 0.13 -1.7 3,558,035 - Dsui_3318 0.13 -1.5 3,558,070 + Dsui_3318 0.15 -1.9 3,558,070 + +0.7 3,558,075 + Dsui_3318 0.15 -1.6 3,558,078 - Dsui_3318 0.16 -1.3 3,558,082 - Dsui_3318 0.16 -1.3 3,558,095 - Dsui_3318 0.17 -0.9 3,558,113 - Dsui_3318 0.18 -1.9 3,558,189 + +0.7 3,558,304 + Dsui_3318 0.29 -1.3 3,558,312 - Dsui_3318 0.30 -0.3 3,558,371 - Dsui_3318 0.33 -0.3 3,558,448 - Dsui_3318 0.38 -0.9 3,558,466 + -0.9 3,558,563 - Dsui_3318 0.45 +0.7 3,558,573 - Dsui_3318 0.46 -1.3 3,558,605 - Dsui_3318 0.48 +0.7 3,558,683 - +0.7 3,558,689 - Dsui_3318 0.53 +0.7 3,558,707 + Dsui_3318 0.54 +0.7 3,558,727 - Dsui_3318 0.55 +0.7
Or see this region's nucleotide sequence