Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3268 and Dsui_3269 are separated by 103 nucleotides Dsui_3269 and Dsui_3270 are separated by 71 nucleotides Dsui_3270 and Dsui_3271 are separated by 70 nucleotides
Dsui_3268: Dsui_3268 - exodeoxyribonuclease VII, large subunit, at 3,506,812 to 3,508,212
_3268
Dsui_3269: Dsui_3269 - superoxide dismutase, at 3,508,316 to 3,508,903
_3269
Dsui_3270: Dsui_3270 - 2'-5' RNA ligase, at 3,508,975 to 3,509,652
_3270
Dsui_3271: Dsui_3271 - ATP-dependent protease Clp, ATPase subunit, at 3,509,723 to 3,510,724
_3271
Position (kb)
3508
3509
3510 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3508.263 kb on + strand at 3508.271 kb on - strand at 3508.271 kb on - strand at 3508.271 kb on - strand at 3508.271 kb on - strand at 3508.275 kb on + strand at 3508.994 kb on + strand at 3508.999 kb on + strand at 3509.001 kb on - strand at 3509.002 kb on - strand at 3509.106 kb on - strand at 3509.106 kb on - strand at 3509.276 kb on + strand, within Dsui_3270 at 3509.282 kb on + strand, within Dsui_3270 at 3509.290 kb on - strand, within Dsui_3270 at 3509.345 kb on + strand, within Dsui_3270 at 3509.497 kb on - strand, within Dsui_3270 at 3509.590 kb on - strand at 3509.596 kb on - strand at 3509.654 kb on - strand at 3509.718 kb on + strand at 3509.718 kb on + strand at 3509.763 kb on + strand at 3509.771 kb on - strand at 3509.878 kb on - strand, within Dsui_3271 at 3510.010 kb on + strand, within Dsui_3271 at 3510.018 kb on - strand at 3510.103 kb on + strand, within Dsui_3271 at 3510.111 kb on - strand at 3510.117 kb on - strand at 3510.239 kb on + strand, within Dsui_3271 at 3510.267 kb on + strand, within Dsui_3271 at 3510.267 kb on + strand, within Dsui_3271 at 3510.369 kb on + strand at 3510.379 kb on + strand at 3510.426 kb on - strand, within Dsui_3271 at 3510.445 kb on + strand, within Dsui_3271 at 3510.445 kb on + strand, within Dsui_3271 at 3510.453 kb on - strand, within Dsui_3271 at 3510.453 kb on - strand at 3510.453 kb on - strand, within Dsui_3271 at 3510.453 kb on - strand at 3510.453 kb on - strand, within Dsui_3271 at 3510.466 kb on + strand, within Dsui_3271 at 3510.474 kb on - strand at 3510.474 kb on - strand at 3510.636 kb on + strand at 3510.643 kb on + strand at 3510.643 kb on + strand at 3510.651 kb on - strand at 3510.651 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 3,508,263 + -0.6 3,508,271 - -0.9 3,508,271 - -0.4 3,508,271 - -0.4 3,508,271 - +0.6 3,508,275 + -1.1 3,508,994 + -1.2 3,508,999 + -0.8 3,509,001 - +0.7 3,509,002 - -0.3 3,509,106 - +0.7 3,509,106 - +0.7 3,509,276 + Dsui_3270 0.44 -2.8 3,509,282 + Dsui_3270 0.45 -1.9 3,509,290 - Dsui_3270 0.46 -0.3 3,509,345 + Dsui_3270 0.55 -2.5 3,509,497 - Dsui_3270 0.77 +0.7 3,509,590 - -0.3 3,509,596 - +0.7 3,509,654 - -0.3 3,509,718 + -3.4 3,509,718 + -0.3 3,509,763 + -2.0 3,509,771 - +0.7 3,509,878 - Dsui_3271 0.15 -2.5 3,510,010 + Dsui_3271 0.29 +0.7 3,510,018 - -0.9 3,510,103 + Dsui_3271 0.38 -0.3 3,510,111 - -0.3 3,510,117 - +0.7 3,510,239 + Dsui_3271 0.51 -1.7 3,510,267 + Dsui_3271 0.54 -1.7 3,510,267 + Dsui_3271 0.54 +0.7 3,510,369 + -0.3 3,510,379 + +0.7 3,510,426 - Dsui_3271 0.70 -0.3 3,510,445 + Dsui_3271 0.72 -1.3 3,510,445 + Dsui_3271 0.72 +0.7 3,510,453 - Dsui_3271 0.73 -0.9 3,510,453 - +0.7 3,510,453 - Dsui_3271 0.73 -1.3 3,510,453 - +0.7 3,510,453 - Dsui_3271 0.73 -1.7 3,510,466 + Dsui_3271 0.74 -0.3 3,510,474 - +0.7 3,510,474 - -0.9 3,510,636 + -0.8 3,510,643 + -0.3 3,510,643 + -0.3 3,510,651 - +0.7 3,510,651 - +0.7
Or see this region's nucleotide sequence