Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3159 and Dsui_3160 are separated by 3 nucleotides Dsui_3160 and Dsui_3161 are separated by 11 nucleotides Dsui_3161 and Dsui_3162 are separated by 311 nucleotides
Dsui_3159: Dsui_3159 - PAS domain S-box, at 3,383,458 to 3,385,446
_3159
Dsui_3160: Dsui_3160 - response regulator, at 3,385,450 to 3,386,052
_3160
Dsui_3161: Dsui_3161 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,386,064 to 3,387,986
_3161
Dsui_3162: Dsui_3162 - TonB-dependent siderophore receptor, at 3,388,298 to 3,390,421
_3162
Position (kb)
3386
3387
3388 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3385.081 kb on + strand, within Dsui_3159 at 3385.095 kb on + strand, within Dsui_3159 at 3385.181 kb on + strand, within Dsui_3159 at 3385.234 kb on + strand, within Dsui_3159 at 3385.247 kb on - strand, within Dsui_3159 at 3385.330 kb on - strand at 3385.330 kb on - strand at 3385.377 kb on + strand at 3385.440 kb on + strand at 3385.567 kb on - strand, within Dsui_3160 at 3385.608 kb on + strand, within Dsui_3160 at 3385.640 kb on + strand, within Dsui_3160 at 3385.640 kb on + strand, within Dsui_3160 at 3385.648 kb on - strand, within Dsui_3160 at 3385.648 kb on - strand, within Dsui_3160 at 3385.648 kb on - strand, within Dsui_3160 at 3385.648 kb on - strand, within Dsui_3160 at 3385.673 kb on - strand, within Dsui_3160 at 3385.680 kb on - strand, within Dsui_3160 at 3385.716 kb on + strand, within Dsui_3160 at 3385.768 kb on + strand, within Dsui_3160 at 3385.883 kb on + strand, within Dsui_3160 at 3385.993 kb on - strand at 3386.032 kb on + strand at 3386.054 kb on - strand at 3386.131 kb on + strand at 3386.204 kb on - strand at 3386.234 kb on - strand at 3386.261 kb on + strand, within Dsui_3161 at 3386.445 kb on - strand, within Dsui_3161 at 3386.453 kb on + strand, within Dsui_3161 at 3386.536 kb on + strand, within Dsui_3161 at 3386.680 kb on - strand at 3386.777 kb on - strand, within Dsui_3161 at 3386.830 kb on + strand, within Dsui_3161 at 3387.063 kb on + strand, within Dsui_3161 at 3387.214 kb on - strand at 3387.302 kb on + strand, within Dsui_3161 at 3387.605 kb on + strand, within Dsui_3161 at 3387.673 kb on + strand, within Dsui_3161 at 3387.719 kb on + strand, within Dsui_3161 at 3387.918 kb on + strand at 3387.988 kb on - strand at 3388.269 kb on + strand at 3388.316 kb on - strand at 3388.345 kb on + strand at 3388.358 kb on - strand at 3388.382 kb on + strand at 3388.390 kb on - strand at 3388.402 kb on - strand at 3388.432 kb on - strand at 3388.432 kb on - strand at 3388.433 kb on - strand at 3388.553 kb on + strand, within Dsui_3162 at 3388.627 kb on - strand at 3388.700 kb on + strand, within Dsui_3162 at 3388.700 kb on + strand, within Dsui_3162 at 3388.751 kb on - strand, within Dsui_3162 at 3388.808 kb on + strand, within Dsui_3162 at 3388.813 kb on + strand, within Dsui_3162 at 3388.922 kb on - strand, within Dsui_3162 at 3388.955 kb on + strand, within Dsui_3162 at 3388.963 kb on - strand, within Dsui_3162
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 3,385,081 + Dsui_3159 0.82 +0.1 3,385,095 + Dsui_3159 0.82 +0.7 3,385,181 + Dsui_3159 0.87 +1.0 3,385,234 + Dsui_3159 0.89 -3.1 3,385,247 - Dsui_3159 0.90 +0.7 3,385,330 - -1.6 3,385,330 - +0.7 3,385,377 + +0.6 3,385,440 + -0.3 3,385,567 - Dsui_3160 0.19 +0.7 3,385,608 + Dsui_3160 0.26 +0.3 3,385,640 + Dsui_3160 0.32 +2.4 3,385,640 + Dsui_3160 0.32 -0.2 3,385,648 - Dsui_3160 0.33 -0.3 3,385,648 - Dsui_3160 0.33 -1.3 3,385,648 - Dsui_3160 0.33 +0.7 3,385,648 - Dsui_3160 0.33 -0.9 3,385,673 - Dsui_3160 0.37 +0.7 3,385,680 - Dsui_3160 0.38 +0.7 3,385,716 + Dsui_3160 0.44 +0.5 3,385,768 + Dsui_3160 0.53 -1.1 3,385,883 + Dsui_3160 0.72 +0.3 3,385,993 - +0.7 3,386,032 + -2.6 3,386,054 - +0.7 3,386,131 + -1.3 3,386,204 - +0.7 3,386,234 - -1.3 3,386,261 + Dsui_3161 0.10 -1.0 3,386,445 - Dsui_3161 0.20 +0.7 3,386,453 + Dsui_3161 0.20 +2.7 3,386,536 + Dsui_3161 0.25 -1.3 3,386,680 - -0.3 3,386,777 - Dsui_3161 0.37 +0.7 3,386,830 + Dsui_3161 0.40 -1.9 3,387,063 + Dsui_3161 0.52 -2.5 3,387,214 - -0.3 3,387,302 + Dsui_3161 0.64 +0.7 3,387,605 + Dsui_3161 0.80 +0.7 3,387,673 + Dsui_3161 0.84 -1.3 3,387,719 + Dsui_3161 0.86 -0.3 3,387,918 + -2.0 3,387,988 - -1.9 3,388,269 + +3.0 3,388,316 - +0.7 3,388,345 + +1.2 3,388,358 - -0.9 3,388,382 + +0.7 3,388,390 - -0.3 3,388,402 - +0.7 3,388,432 - -0.3 3,388,432 - +0.7 3,388,433 - -0.9 3,388,553 + Dsui_3162 0.12 -2.3 3,388,627 - +0.7 3,388,700 + Dsui_3162 0.19 +0.0 3,388,700 + Dsui_3162 0.19 -0.2 3,388,751 - Dsui_3162 0.21 -0.3 3,388,808 + Dsui_3162 0.24 -2.1 3,388,813 + Dsui_3162 0.24 +1.7 3,388,922 - Dsui_3162 0.29 +0.7 3,388,955 + Dsui_3162 0.31 +0.8 3,388,963 - Dsui_3162 0.31 +0.7
Or see this region's nucleotide sequence