Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3085 and Dsui_3086 overlap by 1 nucleotides Dsui_3086 and Dsui_3087 overlap by 1 nucleotides Dsui_3087 and Dsui_3088 are separated by 110 nucleotides
Dsui_3085: Dsui_3085 - tetratricopeptide repeat protein, at 3,303,757 to 3,304,920
_3085
Dsui_3086: Dsui_3086 - hypothetical protein, at 3,304,920 to 3,306,221
_3086
Dsui_3087: Dsui_3087 - peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family, at 3,306,221 to 3,306,796
_3087
Dsui_3088: Dsui_3088 - peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family, at 3,306,907 to 3,307,398
_3088
Position (kb)
3304
3305
3306
3307 Strain fitness (log2 ratio)
-2
-1
0
1 at 3304.080 kb on + strand, within Dsui_3085 at 3304.107 kb on + strand, within Dsui_3085 at 3304.126 kb on + strand, within Dsui_3085 at 3304.137 kb on + strand, within Dsui_3085 at 3304.137 kb on + strand, within Dsui_3085 at 3304.171 kb on + strand, within Dsui_3085 at 3304.234 kb on + strand, within Dsui_3085 at 3304.279 kb on - strand at 3304.281 kb on + strand, within Dsui_3085 at 3304.482 kb on + strand, within Dsui_3085 at 3304.607 kb on - strand, within Dsui_3085 at 3304.644 kb on + strand, within Dsui_3085 at 3304.698 kb on + strand, within Dsui_3085 at 3304.757 kb on - strand at 3304.770 kb on + strand, within Dsui_3085 at 3304.818 kb on + strand at 3305.022 kb on + strand at 3305.130 kb on - strand, within Dsui_3086 at 3305.181 kb on + strand, within Dsui_3086 at 3305.189 kb on - strand at 3305.240 kb on + strand, within Dsui_3086 at 3305.240 kb on + strand, within Dsui_3086 at 3305.307 kb on + strand, within Dsui_3086 at 3305.372 kb on + strand, within Dsui_3086 at 3305.418 kb on + strand, within Dsui_3086 at 3305.439 kb on - strand at 3305.446 kb on - strand, within Dsui_3086 at 3305.480 kb on + strand, within Dsui_3086 at 3305.494 kb on - strand, within Dsui_3086 at 3305.518 kb on + strand, within Dsui_3086 at 3305.526 kb on - strand, within Dsui_3086 at 3305.536 kb on - strand, within Dsui_3086 at 3305.536 kb on - strand, within Dsui_3086 at 3305.559 kb on + strand, within Dsui_3086 at 3305.596 kb on + strand, within Dsui_3086 at 3305.633 kb on - strand, within Dsui_3086 at 3305.945 kb on - strand at 3305.945 kb on - strand, within Dsui_3086 at 3306.038 kb on + strand, within Dsui_3086 at 3306.112 kb on + strand at 3306.112 kb on + strand at 3306.120 kb on - strand at 3306.349 kb on + strand, within Dsui_3087 at 3306.368 kb on + strand, within Dsui_3087 at 3306.556 kb on - strand, within Dsui_3087 at 3306.556 kb on - strand, within Dsui_3087 at 3306.557 kb on - strand, within Dsui_3087 at 3306.630 kb on - strand at 3306.646 kb on + strand, within Dsui_3087 at 3306.646 kb on + strand, within Dsui_3087 at 3306.650 kb on - strand, within Dsui_3087 at 3306.654 kb on - strand at 3306.654 kb on - strand, within Dsui_3087 at 3306.654 kb on - strand, within Dsui_3087 at 3306.768 kb on + strand at 3306.946 kb on + strand at 3307.192 kb on + strand, within Dsui_3088 at 3307.192 kb on + strand, within Dsui_3088
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 3,304,080 + Dsui_3085 0.28 -0.2 3,304,107 + Dsui_3085 0.30 -0.4 3,304,126 + Dsui_3085 0.32 -0.7 3,304,137 + Dsui_3085 0.33 +0.0 3,304,137 + Dsui_3085 0.33 -0.3 3,304,171 + Dsui_3085 0.36 -0.8 3,304,234 + Dsui_3085 0.41 -2.3 3,304,279 - -0.2 3,304,281 + Dsui_3085 0.45 -0.4 3,304,482 + Dsui_3085 0.62 -0.2 3,304,607 - Dsui_3085 0.73 -0.8 3,304,644 + Dsui_3085 0.76 -0.3 3,304,698 + Dsui_3085 0.81 -0.1 3,304,757 - +0.8 3,304,770 + Dsui_3085 0.87 +0.2 3,304,818 + +0.9 3,305,022 + -0.7 3,305,130 - Dsui_3086 0.16 -0.2 3,305,181 + Dsui_3086 0.20 -0.5 3,305,189 - +0.8 3,305,240 + Dsui_3086 0.25 -0.5 3,305,240 + Dsui_3086 0.25 -0.8 3,305,307 + Dsui_3086 0.30 -0.2 3,305,372 + Dsui_3086 0.35 -0.9 3,305,418 + Dsui_3086 0.38 +0.4 3,305,439 - -0.8 3,305,446 - Dsui_3086 0.40 +0.8 3,305,480 + Dsui_3086 0.43 -0.1 3,305,494 - Dsui_3086 0.44 -0.2 3,305,518 + Dsui_3086 0.46 -1.2 3,305,526 - Dsui_3086 0.47 +0.8 3,305,536 - Dsui_3086 0.47 -0.2 3,305,536 - Dsui_3086 0.47 -2.6 3,305,559 + Dsui_3086 0.49 -0.6 3,305,596 + Dsui_3086 0.52 -0.5 3,305,633 - Dsui_3086 0.55 +0.8 3,305,945 - -0.2 3,305,945 - Dsui_3086 0.79 -0.2 3,306,038 + Dsui_3086 0.86 -0.7 3,306,112 + -0.6 3,306,112 + -0.7 3,306,120 - +0.8 3,306,349 + Dsui_3087 0.22 +0.2 3,306,368 + Dsui_3087 0.26 -0.3 3,306,556 - Dsui_3087 0.58 -2.1 3,306,556 - Dsui_3087 0.58 -0.2 3,306,557 - Dsui_3087 0.58 -1.2 3,306,630 - -0.8 3,306,646 + Dsui_3087 0.74 -0.2 3,306,646 + Dsui_3087 0.74 -0.3 3,306,650 - Dsui_3087 0.74 +0.8 3,306,654 - +0.8 3,306,654 - Dsui_3087 0.75 -0.2 3,306,654 - Dsui_3087 0.75 -0.8 3,306,768 + -0.2 3,306,946 + -0.4 3,307,192 + Dsui_3088 0.58 -0.5 3,307,192 + Dsui_3088 0.58 +0.2
Or see this region's nucleotide sequence