Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3068 and Dsui_3069 are separated by 52 nucleotides Dsui_3069 and Dsui_3070 are separated by 58 nucleotides Dsui_3070 and Dsui_3071 overlap by 70 nucleotides Dsui_3071 and Dsui_3072 are separated by 97 nucleotides
Dsui_3068: Dsui_3068 - Fe2+/Zn2+ uptake regulation protein, at 3,284,254 to 3,284,724
_3068
Dsui_3069: Dsui_3069 - putative membrane protein, at 3,284,777 to 3,285,343
_3069
Dsui_3070: Dsui_3070 - periplasmic component of amino acid ABC-type transporter/signal transduction system, at 3,285,402 to 3,286,253
_3070
Dsui_3071: Dsui_3071 - SprA-related family, at 3,286,184 to 3,286,972
_3071
Dsui_3072: Dsui_3072 - DNA repair protein RecN, at 3,287,070 to 3,288,725
_3072
Position (kb)
3285
3286
3287 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3284.707 kb on - strand at 3284.753 kb on + strand at 3284.793 kb on + strand at 3284.793 kb on + strand at 3284.796 kb on + strand at 3284.833 kb on + strand at 3284.834 kb on + strand, within Dsui_3069 at 3284.855 kb on - strand at 3284.869 kb on + strand, within Dsui_3069 at 3284.919 kb on + strand, within Dsui_3069 at 3284.927 kb on - strand at 3284.963 kb on - strand at 3285.202 kb on + strand, within Dsui_3069 at 3285.228 kb on - strand at 3285.263 kb on + strand, within Dsui_3069 at 3285.323 kb on - strand at 3285.390 kb on - strand at 3285.425 kb on + strand at 3285.454 kb on - strand at 3285.521 kb on - strand, within Dsui_3070 at 3285.528 kb on + strand, within Dsui_3070 at 3285.583 kb on - strand, within Dsui_3070 at 3285.601 kb on + strand, within Dsui_3070 at 3285.672 kb on + strand, within Dsui_3070 at 3285.711 kb on - strand, within Dsui_3070 at 3285.769 kb on + strand, within Dsui_3070 at 3285.771 kb on - strand, within Dsui_3070 at 3285.777 kb on - strand, within Dsui_3070 at 3285.777 kb on - strand, within Dsui_3070 at 3285.782 kb on - strand, within Dsui_3070 at 3285.883 kb on + strand, within Dsui_3070 at 3285.890 kb on - strand, within Dsui_3070 at 3285.999 kb on + strand, within Dsui_3070 at 3286.006 kb on - strand, within Dsui_3070 at 3286.342 kb on + strand, within Dsui_3071 at 3286.351 kb on + strand, within Dsui_3071 at 3286.376 kb on - strand, within Dsui_3071 at 3286.497 kb on - strand, within Dsui_3071 at 3286.518 kb on + strand, within Dsui_3071 at 3286.592 kb on - strand, within Dsui_3071 at 3286.640 kb on - strand, within Dsui_3071 at 3286.640 kb on - strand, within Dsui_3071 at 3286.665 kb on + strand, within Dsui_3071 at 3286.684 kb on + strand at 3286.776 kb on - strand, within Dsui_3071 at 3286.988 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 3,284,707 - -1.6 3,284,753 + -0.6 3,284,793 + -1.3 3,284,793 + +1.7 3,284,796 + +1.7 3,284,833 + -3.4 3,284,834 + Dsui_3069 0.10 -1.3 3,284,855 - +0.7 3,284,869 + Dsui_3069 0.16 -1.6 3,284,919 + Dsui_3069 0.25 -3.0 3,284,927 - +0.7 3,284,963 - -0.8 3,285,202 + Dsui_3069 0.75 -1.6 3,285,228 - -0.3 3,285,263 + Dsui_3069 0.86 -0.9 3,285,323 - +0.7 3,285,390 - +0.7 3,285,425 + -0.2 3,285,454 - +0.7 3,285,521 - Dsui_3070 0.14 -0.3 3,285,528 + Dsui_3070 0.15 +0.4 3,285,583 - Dsui_3070 0.21 -0.8 3,285,601 + Dsui_3070 0.23 -0.2 3,285,672 + Dsui_3070 0.32 -0.2 3,285,711 - Dsui_3070 0.36 +0.7 3,285,769 + Dsui_3070 0.43 +0.0 3,285,771 - Dsui_3070 0.43 -0.8 3,285,777 - Dsui_3070 0.44 +0.7 3,285,777 - Dsui_3070 0.44 +0.7 3,285,782 - Dsui_3070 0.45 -1.3 3,285,883 + Dsui_3070 0.56 -0.3 3,285,890 - Dsui_3070 0.57 +0.7 3,285,999 + Dsui_3070 0.70 +0.4 3,286,006 - Dsui_3070 0.71 +0.7 3,286,342 + Dsui_3071 0.20 -0.7 3,286,351 + Dsui_3071 0.21 -0.3 3,286,376 - Dsui_3071 0.24 -0.1 3,286,497 - Dsui_3071 0.40 +0.3 3,286,518 + Dsui_3071 0.42 -0.3 3,286,592 - Dsui_3071 0.52 +0.3 3,286,640 - Dsui_3071 0.58 +0.5 3,286,640 - Dsui_3071 0.58 -0.3 3,286,665 + Dsui_3071 0.61 -0.3 3,286,684 + -0.3 3,286,776 - Dsui_3071 0.75 +0.2 3,286,988 - -0.2
Or see this region's nucleotide sequence