Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3013 and Dsui_3014 are separated by 9 nucleotides Dsui_3014 and Dsui_3015 overlap by 4 nucleotides Dsui_3015 and Dsui_3016 are separated by 59 nucleotides
Dsui_3013: Dsui_3013 - hypothetical protein, at 3,227,454 to 3,229,295
_3013
Dsui_3014: Dsui_3014 - outer membrane protein/peptidoglycan-associated (lipo)protein, at 3,229,305 to 3,230,024
_3014
Dsui_3015: Dsui_3015 - hypothetical protein, at 3,230,021 to 3,230,548
_3015
Dsui_3016: Dsui_3016 - hypothetical protein, at 3,230,608 to 3,230,928
_3016
Position (kb)
3229
3230
3231 Strain fitness (log2 ratio)
-2
-1
0
1 at 3228.321 kb on + strand, within Dsui_3013 at 3228.353 kb on + strand, within Dsui_3013 at 3228.361 kb on - strand at 3228.507 kb on - strand at 3228.682 kb on - strand, within Dsui_3013 at 3228.789 kb on + strand, within Dsui_3013 at 3228.832 kb on - strand, within Dsui_3013 at 3229.021 kb on + strand, within Dsui_3013 at 3229.094 kb on - strand at 3229.115 kb on + strand at 3229.140 kb on + strand at 3229.181 kb on + strand at 3229.195 kb on - strand at 3229.230 kb on + strand at 3229.270 kb on - strand at 3229.290 kb on + strand at 3229.315 kb on - strand at 3229.351 kb on + strand at 3229.409 kb on - strand, within Dsui_3014 at 3229.452 kb on - strand at 3229.710 kb on + strand, within Dsui_3014 at 3229.802 kb on - strand at 3229.862 kb on + strand at 3229.870 kb on - strand at 3229.969 kb on - strand at 3229.989 kb on + strand at 3229.990 kb on - strand at 3230.050 kb on - strand at 3230.262 kb on - strand at 3230.266 kb on + strand at 3230.280 kb on - strand at 3230.400 kb on - strand at 3230.510 kb on - strand at 3230.664 kb on - strand, within Dsui_3016 at 3230.664 kb on - strand, within Dsui_3016 at 3230.670 kb on - strand, within Dsui_3016 at 3230.759 kb on - strand, within Dsui_3016 at 3230.769 kb on - strand, within Dsui_3016 at 3230.872 kb on - strand, within Dsui_3016 at 3230.952 kb on - strand at 3230.958 kb on + strand at 3230.966 kb on - strand at 3230.971 kb on - strand at 3230.971 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 3,228,321 + Dsui_3013 0.47 -0.4 3,228,353 + Dsui_3013 0.49 -0.2 3,228,361 - +0.8 3,228,507 - +0.8 3,228,682 - Dsui_3013 0.67 -0.8 3,228,789 + Dsui_3013 0.72 -1.0 3,228,832 - Dsui_3013 0.75 -0.2 3,229,021 + Dsui_3013 0.85 -0.3 3,229,094 - +0.8 3,229,115 + +0.3 3,229,140 + -1.1 3,229,181 + -0.2 3,229,195 - +0.8 3,229,230 + +0.4 3,229,270 - -1.2 3,229,290 + -0.2 3,229,315 - -0.8 3,229,351 + -0.0 3,229,409 - Dsui_3014 0.14 -1.5 3,229,452 - +0.8 3,229,710 + Dsui_3014 0.56 -1.6 3,229,802 - -0.2 3,229,862 + +0.8 3,229,870 - +0.8 3,229,969 - -0.2 3,229,989 + +0.3 3,229,990 - +0.8 3,230,050 - -1.5 3,230,262 - +0.8 3,230,266 + +0.8 3,230,280 - -0.8 3,230,400 - -0.2 3,230,510 - -1.8 3,230,664 - Dsui_3016 0.17 +0.5 3,230,664 - Dsui_3016 0.17 -0.7 3,230,670 - Dsui_3016 0.19 +0.3 3,230,759 - Dsui_3016 0.47 -0.0 3,230,769 - Dsui_3016 0.50 +0.7 3,230,872 - Dsui_3016 0.82 -0.1 3,230,952 - -0.0 3,230,958 + +0.8 3,230,966 - -0.1 3,230,971 - +0.2 3,230,971 - -0.7
Or see this region's nucleotide sequence