Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2984 and Dsui_2985 are separated by 273 nucleotides Dsui_2985 and Dsui_2986 are separated by 19 nucleotides Dsui_2986 and Dsui_2987 are separated by 3 nucleotides
Dsui_2984: Dsui_2984 - electron transport complex, RnfABCDGE type, E subunit, at 3,190,624 to 3,191,313
_2984
Dsui_2985: Dsui_2985 - endonuclease III, at 3,191,587 to 3,192,237
_2985
Dsui_2986: Dsui_2986 - hypothetical protein, at 3,192,257 to 3,193,336
_2986
Dsui_2987: Dsui_2987 - protein of unknown function (DUF1841), at 3,193,340 to 3,193,771
_2987
Position (kb)
3192
3193
3194 Strain fitness (log2 ratio)
-2
-1
0
1 at 3191.282 kb on - strand at 3191.292 kb on + strand at 3191.319 kb on + strand at 3191.379 kb on - strand at 3191.391 kb on + strand at 3191.517 kb on - strand at 3191.519 kb on + strand at 3191.519 kb on - strand at 3191.577 kb on + strand at 3191.585 kb on - strand at 3191.697 kb on + strand, within Dsui_2985 at 3191.727 kb on + strand, within Dsui_2985 at 3191.735 kb on - strand, within Dsui_2985 at 3191.742 kb on - strand, within Dsui_2985 at 3192.065 kb on + strand, within Dsui_2985 at 3192.075 kb on + strand, within Dsui_2985 at 3192.114 kb on + strand, within Dsui_2985 at 3192.142 kb on - strand, within Dsui_2985 at 3192.143 kb on + strand, within Dsui_2985 at 3192.201 kb on - strand at 3192.213 kb on - strand at 3192.223 kb on - strand at 3192.226 kb on + strand at 3192.231 kb on + strand at 3192.231 kb on + strand at 3192.231 kb on + strand at 3192.231 kb on + strand at 3192.239 kb on - strand at 3192.239 kb on - strand at 3192.239 kb on - strand at 3192.301 kb on - strand at 3192.379 kb on + strand, within Dsui_2986 at 3192.382 kb on - strand, within Dsui_2986 at 3192.450 kb on + strand, within Dsui_2986 at 3192.487 kb on - strand, within Dsui_2986 at 3192.496 kb on + strand, within Dsui_2986 at 3192.717 kb on - strand at 3192.884 kb on - strand at 3192.924 kb on - strand at 3192.947 kb on + strand, within Dsui_2986 at 3192.955 kb on - strand at 3192.956 kb on - strand at 3192.965 kb on - strand at 3192.972 kb on + strand, within Dsui_2986 at 3193.048 kb on + strand, within Dsui_2986 at 3193.119 kb on + strand, within Dsui_2986 at 3193.140 kb on + strand, within Dsui_2986 at 3193.153 kb on - strand, within Dsui_2986 at 3193.768 kb on - strand at 3193.865 kb on + strand at 3193.923 kb on - strand at 3193.950 kb on - strand at 3193.974 kb on + strand at 3193.991 kb on + strand at 3193.996 kb on + strand at 3194.038 kb on - strand at 3194.091 kb on - strand at 3194.229 kb on - strand at 3194.245 kb on - strand at 3194.275 kb on + strand at 3194.295 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 3,191,282 - +0.8 3,191,292 + -0.2 3,191,319 + -0.3 3,191,379 - -0.8 3,191,391 + -0.2 3,191,517 - +0.8 3,191,519 + -0.0 3,191,519 - +0.8 3,191,577 + -0.4 3,191,585 - -1.2 3,191,697 + Dsui_2985 0.17 -0.5 3,191,727 + Dsui_2985 0.22 +0.2 3,191,735 - Dsui_2985 0.23 +0.8 3,191,742 - Dsui_2985 0.24 -0.8 3,192,065 + Dsui_2985 0.73 -0.3 3,192,075 + Dsui_2985 0.75 -0.5 3,192,114 + Dsui_2985 0.81 -0.9 3,192,142 - Dsui_2985 0.85 +0.8 3,192,143 + Dsui_2985 0.85 -0.6 3,192,201 - +0.8 3,192,213 - +0.8 3,192,223 - -2.0 3,192,226 + -0.2 3,192,231 + -0.2 3,192,231 + +0.5 3,192,231 + -0.3 3,192,231 + -0.2 3,192,239 - -0.2 3,192,239 - -0.8 3,192,239 - +0.8 3,192,301 - +0.8 3,192,379 + Dsui_2986 0.11 +0.3 3,192,382 - Dsui_2986 0.12 -1.6 3,192,450 + Dsui_2986 0.18 -0.7 3,192,487 - Dsui_2986 0.21 +0.8 3,192,496 + Dsui_2986 0.22 -1.0 3,192,717 - -0.2 3,192,884 - +0.8 3,192,924 - -0.2 3,192,947 + Dsui_2986 0.64 -0.4 3,192,955 - -0.2 3,192,956 - +0.8 3,192,965 - +0.8 3,192,972 + Dsui_2986 0.66 -1.5 3,193,048 + Dsui_2986 0.73 -0.6 3,193,119 + Dsui_2986 0.80 -0.4 3,193,140 + Dsui_2986 0.82 -0.9 3,193,153 - Dsui_2986 0.83 -2.4 3,193,768 - -0.8 3,193,865 + -1.2 3,193,923 - +0.8 3,193,950 - -0.8 3,193,974 + -0.1 3,193,991 + -1.5 3,193,996 + +0.2 3,194,038 - -1.2 3,194,091 - -0.2 3,194,229 - +0.8 3,194,245 - -0.8 3,194,275 + -1.6 3,194,295 + +0.8
Or see this region's nucleotide sequence