Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2979 and Dsui_2980 overlap by 1 nucleotides Dsui_2980 and Dsui_2981 are separated by 3 nucleotides Dsui_2981 and Dsui_2982 are separated by 10 nucleotides
Dsui_2979: Dsui_2979 - electron transport complex, RnfABCDGE type, A subunit, at 3,186,018 to 3,186,605
_2979
Dsui_2980: Dsui_2980 - electron transport complex, RnfABCDGE type, B subunit, at 3,186,605 to 3,187,147
_2980
Dsui_2981: Dsui_2981 - electron transport complex, RnfABCDGE type, C subunit, at 3,187,151 to 3,188,932
_2981
Dsui_2982: Dsui_2982 - electron transport complex, RnfABCDGE type, D subunit, at 3,188,943 to 3,189,932
_2982
Position (kb)
3187
3188
3189 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3186.207 kb on - strand, within Dsui_2979 at 3186.241 kb on + strand, within Dsui_2979 at 3186.624 kb on + strand at 3186.939 kb on + strand, within Dsui_2980 at 3187.493 kb on + strand, within Dsui_2981 at 3187.865 kb on - strand at 3188.387 kb on + strand, within Dsui_2981 at 3188.521 kb on + strand, within Dsui_2981 at 3188.850 kb on - strand at 3189.316 kb on + strand, within Dsui_2982 at 3189.373 kb on + strand, within Dsui_2982 at 3189.868 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 3,186,207 - Dsui_2979 0.32 -1.8 3,186,241 + Dsui_2979 0.38 -1.5 3,186,624 + -1.8 3,186,939 + Dsui_2980 0.62 -2.8 3,187,493 + Dsui_2981 0.19 -1.9 3,187,865 - +0.8 3,188,387 + Dsui_2981 0.69 -3.5 3,188,521 + Dsui_2981 0.77 -3.2 3,188,850 - +0.8 3,189,316 + Dsui_2982 0.38 -2.5 3,189,373 + Dsui_2982 0.43 -1.4 3,189,868 + -1.7
Or see this region's nucleotide sequence